Strain Fitness in Sinorhizobium meliloti 1021 around SMa0436

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0433 and SMa0436 are separated by 217 nucleotides SMa0433: SMa0433 - hypothetical protein, at 233,560 to 234,030 SMa0433 SMa0436: SMa0436 - hypothetical protein, at 234,248 to 234,631 SMa0436 Position (kb) 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 233.342 kb on + strandat 233.414 kb on - strandat 233.414 kb on - strandat 233.419 kb on - strandat 233.603 kb on + strandat 233.604 kb on - strandat 233.698 kb on + strand, within SMa0433at 233.704 kb on - strand, within SMa0433at 234.087 kb on + strandat 234.087 kb on + strandat 234.087 kb on + strandat 234.088 kb on - strandat 234.194 kb on - strandat 234.194 kb on - strandat 234.286 kb on + strandat 234.287 kb on - strand, within SMa0436at 234.287 kb on - strand, within SMa0436at 234.359 kb on + strand, within SMa0436at 234.359 kb on + strand, within SMa0436at 234.360 kb on - strand, within SMa0436at 234.366 kb on - strand, within SMa0436at 234.366 kb on - strand, within SMa0436at 234.372 kb on + strand, within SMa0436at 234.373 kb on - strand, within SMa0436at 234.403 kb on + strand, within SMa0436at 234.403 kb on + strand, within SMa0436at 234.410 kb on + strand, within SMa0436at 234.492 kb on - strand, within SMa0436at 234.592 kb on + strand, within SMa0436at 234.593 kb on - strandat 234.715 kb on + strandat 234.725 kb on + strandat 234.726 kb on - strandat 234.726 kb on - strandat 234.742 kb on - strandat 234.747 kb on + strandat 234.755 kb on + strandat 234.755 kb on + strandat 234.756 kb on - strandat 234.883 kb on + strandat 234.884 kb on - strandat 234.884 kb on - strandat 234.925 kb on - strandat 234.976 kb on - strandat 234.976 kb on - strandat 235.011 kb on - strandat 235.200 kb on + strandat 235.200 kb on + strandat 235.200 kb on + strandat 235.237 kb on - strandat 235.258 kb on + strandat 235.258 kb on + strandat 235.259 kb on - strandat 235.290 kb on + strandat 235.291 kb on - strandat 235.312 kb on - strandat 235.360 kb on + strandat 235.445 kb on - strandat 235.477 kb on + strandat 235.478 kb on - strandat 235.478 kb on - strandat 235.478 kb on - strandat 235.494 kb on + strandat 235.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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233,342 + -0.7
233,414 - -0.5
233,414 - +0.0
233,419 - +0.1
233,603 + -1.7
233,604 - -1.0
233,698 + SMa0433 0.29 +0.1
233,704 - SMa0433 0.31 -0.0
234,087 + +2.1
234,087 + -1.8
234,087 + +0.8
234,088 - -0.3
234,194 - -1.3
234,194 - -0.2
234,286 + +2.0
234,287 - SMa0436 0.10 +0.3
234,287 - SMa0436 0.10 -0.1
234,359 + SMa0436 0.29 +0.6
234,359 + SMa0436 0.29 +0.7
234,360 - SMa0436 0.29 -0.1
234,366 - SMa0436 0.31 +0.7
234,366 - SMa0436 0.31 +1.1
234,372 + SMa0436 0.32 +0.4
234,373 - SMa0436 0.33 +1.6
234,403 + SMa0436 0.40 -0.7
234,403 + SMa0436 0.40 +0.9
234,410 + SMa0436 0.42 -0.1
234,492 - SMa0436 0.64 -0.6
234,592 + SMa0436 0.90 -2.1
234,593 - -0.9
234,715 + -0.5
234,725 + -2.7
234,726 - -0.2
234,726 - -0.8
234,742 - +0.4
234,747 + +0.6
234,755 + +0.3
234,755 + +0.3
234,756 - -0.9
234,883 + +0.4
234,884 - +0.6
234,884 - -0.1
234,925 - +0.5
234,976 - +0.4
234,976 - +1.7
235,011 - +0.2
235,200 + +0.6
235,200 + -0.3
235,200 + -2.8
235,237 - +0.4
235,258 + +0.5
235,258 + +2.2
235,259 - +1.1
235,290 + -0.0
235,291 - +0.2
235,312 - +0.3
235,360 + -1.0
235,445 - -0.5
235,477 + +0.1
235,478 - -0.8
235,478 - +2.4
235,478 - +0.5
235,494 + +0.2
235,505 - +1.1

Or see this region's nucleotide sequence