Strain Fitness in Sinorhizobium meliloti 1021 around SMa0007

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0002 and SMa0005 overlap by 4 nucleotidesSMa0005 and SMa0007 overlap by 23 nucleotidesSMa0007 and SMa0009 are separated by 38 nucleotidesSMa0009 and SMa0011 are separated by 4 nucleotides SMa0002: SMa0002 - formate dehydrogenase subunit alpha, at 1,353 to 4,457 SMa0002 SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446 SMa0005 SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110 SMa0007 SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069 SMa0009 SMa0011: SMa0011 - selenocysteine synthase, at 7,074 to 8,474 SMa0011 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4.449 kb on - strandat 4.453 kb on + strandat 4.453 kb on + strandat 4.453 kb on + strandat 4.454 kb on - strandat 4.454 kb on - strandat 4.516 kb on + strandat 4.691 kb on + strand, within SMa0005at 4.694 kb on + strand, within SMa0005at 4.695 kb on - strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.697 kb on - strand, within SMa0005at 4.869 kb on - strand, within SMa0005at 4.923 kb on + strand, within SMa0005at 4.976 kb on + strandat 4.977 kb on - strandat 4.977 kb on - strand, within SMa0005at 5.126 kb on + strand, within SMa0005at 5.128 kb on + strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.144 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.213 kb on + strand, within SMa0005at 5.213 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.790 kb on + strand, within SMa0007at 5.790 kb on + strand, within SMa0007at 5.790 kb on + strand, within SMa0007at 5.791 kb on - strand, within SMa0007at 5.791 kb on - strand, within SMa0007at 5.877 kb on + strand, within SMa0007at 5.883 kb on + strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.891 kb on + strand, within SMa0007at 5.891 kb on + strandat 5.891 kb on + strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.977 kb on - strand, within SMa0007at 5.977 kb on - strand, within SMa0007at 5.977 kb on - strand, within SMa0007at 6.166 kb on - strandat 6.296 kb on + strand, within SMa0009at 6.297 kb on - strand, within SMa0009at 6.620 kb on + strand, within SMa0009at 6.620 kb on + strand, within SMa0009at 6.620 kb on + strand, within SMa0009at 6.620 kb on + strand, within SMa0009at 6.621 kb on - strand, within SMa0009at 6.621 kb on - strand, within SMa0009at 6.621 kb on - strand, within SMa0009at 6.861 kb on - strand, within SMa0009at 6.944 kb on + strand, within SMa0009at 7.028 kb on + strandat 7.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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4,449 - -0.1
4,453 + -0.7
4,453 + -2.5
4,453 + +0.8
4,454 - +0.2
4,454 - -0.0
4,516 + +0.9
4,691 + SMa0005 0.24 +0.8
4,694 + SMa0005 0.24 +0.7
4,695 - SMa0005 0.24 +0.3
4,696 + SMa0005 0.24 -0.6
4,696 + SMa0005 0.24 +0.1
4,696 + SMa0005 0.24 -1.3
4,696 + SMa0005 0.24 -1.1
4,696 + SMa0005 0.24 +0.1
4,697 - SMa0005 0.24 +0.1
4,869 - SMa0005 0.42 -0.4
4,923 + SMa0005 0.47 -0.2
4,976 + +4.1
4,977 - +1.5
4,977 - SMa0005 0.53 -0.8
5,126 + SMa0005 0.68 +0.4
5,128 + SMa0005 0.68 +0.0
5,129 - SMa0005 0.68 +0.4
5,129 - SMa0005 0.68 -0.0
5,129 - SMa0005 0.68 +0.2
5,144 + SMa0005 0.69 -0.7
5,180 + SMa0005 0.73 +1.9
5,180 + SMa0005 0.73 +1.4
5,180 + SMa0005 0.73 -0.5
5,180 + SMa0005 0.73 -0.8
5,180 + SMa0005 0.73 +0.5
5,180 + SMa0005 0.73 +1.7
5,180 + SMa0005 0.73 +0.9
5,180 + SMa0005 0.73 -0.0
5,180 + SMa0005 0.73 +1.3
5,181 - SMa0005 0.73 -1.2
5,181 - SMa0005 0.73 -0.4
5,181 - SMa0005 0.73 -0.5
5,181 - SMa0005 0.73 +0.5
5,181 - SMa0005 0.73 +0.3
5,181 - SMa0005 0.73 +0.2
5,181 - SMa0005 0.73 +0.6
5,213 + SMa0005 0.76 -0.3
5,213 + SMa0005 0.76 -2.7
5,279 + SMa0005 0.83 -0.0
5,279 + SMa0005 0.83 -2.0
5,279 + SMa0005 0.83 +0.1
5,280 - SMa0005 0.83 -0.8
5,280 - SMa0005 0.83 -0.5
5,280 - SMa0005 0.83 +0.4
5,790 + SMa0007 0.53 -1.3
5,790 + SMa0007 0.53 -1.0
5,790 + SMa0007 0.53 -1.3
5,791 - SMa0007 0.53 +0.0
5,791 - SMa0007 0.53 -1.5
5,877 + SMa0007 0.66 +1.5
5,883 + SMa0007 0.67 -1.1
5,884 - SMa0007 0.67 +0.2
5,884 - SMa0007 0.67 +1.8
5,884 - SMa0007 0.67 +0.0
5,884 - SMa0007 0.67 +3.6
5,890 - SMa0007 0.68 +0.7
5,890 - SMa0007 0.68 +1.0
5,890 - SMa0007 0.68 -0.1
5,890 - SMa0007 0.68 -0.5
5,891 + SMa0007 0.68 +1.1
5,891 + +2.5
5,891 + SMa0007 0.68 -0.2
5,892 - SMa0007 0.68 +0.3
5,892 - SMa0007 0.68 +0.7
5,892 - SMa0007 0.68 -0.7
5,892 - SMa0007 0.68 +0.6
5,892 - SMa0007 0.68 -0.4
5,892 - SMa0007 0.68 +0.0
5,977 - SMa0007 0.80 +2.7
5,977 - SMa0007 0.80 -0.5
5,977 - SMa0007 0.80 +0.2
6,166 - -0.2
6,296 + SMa0009 0.16 +0.3
6,297 - SMa0009 0.16 +1.4
6,620 + SMa0009 0.51 +0.3
6,620 + SMa0009 0.51 -1.5
6,620 + SMa0009 0.51 +0.6
6,620 + SMa0009 0.51 -0.3
6,621 - SMa0009 0.51 -2.0
6,621 - SMa0009 0.51 -0.8
6,621 - SMa0009 0.51 +0.3
6,861 - SMa0009 0.77 -0.2
6,944 + SMa0009 0.86 -0.6
7,028 + +0.4
7,028 + +1.1

Or see this region's nucleotide sequence