Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21518

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21517 and SM_b21518 are separated by 21 nucleotidesSM_b21518 and SM_b21519 are separated by 215 nucleotides SM_b21517: SM_b21517 - hypothetical protein, at 1,441,331 to 1,442,146 _b21517 SM_b21518: SM_b21518 - hypothetical protein, at 1,442,168 to 1,442,923 _b21518 SM_b21519: SM_b21519 - two-component sensor histidine kinase, at 1,443,139 to 1,444,611 _b21519 Position (kb) 1442 1443Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1441.205 kb on + strandat 1441.209 kb on - strandat 1441.316 kb on + strandat 1441.316 kb on + strandat 1441.317 kb on - strandat 1441.317 kb on - strandat 1441.317 kb on - strandat 1441.332 kb on + strandat 1441.332 kb on + strandat 1441.333 kb on - strandat 1441.333 kb on - strandat 1441.333 kb on - strandat 1441.401 kb on + strandat 1441.401 kb on + strandat 1441.402 kb on - strandat 1441.485 kb on + strand, within SM_b21517at 1441.486 kb on - strand, within SM_b21517at 1441.486 kb on - strand, within SM_b21517at 1441.486 kb on - strand, within SM_b21517at 1441.486 kb on - strandat 1441.486 kb on - strand, within SM_b21517at 1441.486 kb on - strand, within SM_b21517at 1441.686 kb on + strand, within SM_b21517at 1441.687 kb on - strand, within SM_b21517at 1441.809 kb on + strand, within SM_b21517at 1441.809 kb on + strandat 1441.917 kb on + strand, within SM_b21517at 1442.000 kb on + strand, within SM_b21517at 1442.001 kb on - strand, within SM_b21517at 1442.025 kb on + strand, within SM_b21517at 1442.025 kb on + strand, within SM_b21517at 1442.026 kb on - strand, within SM_b21517at 1442.026 kb on - strand, within SM_b21517at 1442.026 kb on - strand, within SM_b21517at 1442.026 kb on - strand, within SM_b21517at 1442.079 kb on - strandat 1442.204 kb on - strandat 1442.224 kb on + strandat 1442.231 kb on + strandat 1442.232 kb on - strandat 1442.232 kb on - strandat 1442.403 kb on + strand, within SM_b21518at 1442.466 kb on + strand, within SM_b21518at 1442.466 kb on + strand, within SM_b21518at 1442.466 kb on + strand, within SM_b21518at 1442.467 kb on - strand, within SM_b21518at 1442.467 kb on - strand, within SM_b21518at 1442.467 kb on - strand, within SM_b21518at 1442.467 kb on - strand, within SM_b21518at 1442.561 kb on + strand, within SM_b21518at 1442.562 kb on - strand, within SM_b21518at 1442.562 kb on - strand, within SM_b21518at 1442.707 kb on + strand, within SM_b21518at 1442.708 kb on - strand, within SM_b21518at 1442.835 kb on + strand, within SM_b21518at 1442.890 kb on + strandat 1442.890 kb on + strandat 1442.891 kb on - strandat 1442.891 kb on - strandat 1443.052 kb on + strandat 1443.052 kb on + strandat 1443.053 kb on - strandat 1443.053 kb on - strandat 1443.053 kb on - strandat 1443.053 kb on - strandat 1443.053 kb on - strandat 1443.093 kb on - strandat 1443.093 kb on - strandat 1443.106 kb on - strandat 1443.144 kb on - strandat 1443.335 kb on + strand, within SM_b21519at 1443.336 kb on - strandat 1443.379 kb on + strand, within SM_b21519at 1443.379 kb on + strand, within SM_b21519at 1443.380 kb on - strand, within SM_b21519at 1443.380 kb on - strand, within SM_b21519at 1443.380 kb on - strand, within SM_b21519at 1443.571 kb on + strand, within SM_b21519at 1443.572 kb on - strand, within SM_b21519at 1443.691 kb on + strand, within SM_b21519at 1443.692 kb on - strand, within SM_b21519at 1443.692 kb on - strand, within SM_b21519at 1443.692 kb on - strand, within SM_b21519

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,441,205 + -0.8
1,441,209 - -0.4
1,441,316 + +0.6
1,441,316 + +0.5
1,441,317 - +0.1
1,441,317 - -1.2
1,441,317 - +2.6
1,441,332 + +1.3
1,441,332 + +0.6
1,441,333 - +0.0
1,441,333 - +1.1
1,441,333 - +0.1
1,441,401 + -1.9
1,441,401 + -0.0
1,441,402 - +0.6
1,441,485 + SM_b21517 0.19 -0.4
1,441,486 - SM_b21517 0.19 +0.4
1,441,486 - SM_b21517 0.19 +0.0
1,441,486 - SM_b21517 0.19 +0.9
1,441,486 - +3.2
1,441,486 - SM_b21517 0.19 +0.4
1,441,486 - SM_b21517 0.19 -0.2
1,441,686 + SM_b21517 0.44 -0.3
1,441,687 - SM_b21517 0.44 -0.2
1,441,809 + SM_b21517 0.59 +1.2
1,441,809 + +2.6
1,441,917 + SM_b21517 0.72 +0.5
1,442,000 + SM_b21517 0.82 -2.2
1,442,001 - SM_b21517 0.82 -0.2
1,442,025 + SM_b21517 0.85 -1.1
1,442,025 + SM_b21517 0.85 -0.8
1,442,026 - SM_b21517 0.85 +0.6
1,442,026 - SM_b21517 0.85 -1.4
1,442,026 - SM_b21517 0.85 -1.4
1,442,026 - SM_b21517 0.85 -0.6
1,442,079 - +0.5
1,442,204 - -0.4
1,442,224 + +1.2
1,442,231 + +1.6
1,442,232 - +1.3
1,442,232 - +0.7
1,442,403 + SM_b21518 0.31 -0.8
1,442,466 + SM_b21518 0.39 -0.7
1,442,466 + SM_b21518 0.39 -0.1
1,442,466 + SM_b21518 0.39 -0.2
1,442,467 - SM_b21518 0.40 -0.7
1,442,467 - SM_b21518 0.40 -1.7
1,442,467 - SM_b21518 0.40 +2.0
1,442,467 - SM_b21518 0.40 -1.2
1,442,561 + SM_b21518 0.52 +0.2
1,442,562 - SM_b21518 0.52 -0.7
1,442,562 - SM_b21518 0.52 -0.6
1,442,707 + SM_b21518 0.71 -0.2
1,442,708 - SM_b21518 0.71 +0.1
1,442,835 + SM_b21518 0.88 -0.2
1,442,890 + -0.4
1,442,890 + -1.8
1,442,891 - +0.3
1,442,891 - +1.0
1,443,052 + +0.5
1,443,052 + +1.5
1,443,053 - -1.1
1,443,053 - +0.3
1,443,053 - +0.1
1,443,053 - -0.1
1,443,053 - +0.6
1,443,093 - -0.1
1,443,093 - +0.6
1,443,106 - -0.5
1,443,144 - +0.3
1,443,335 + SM_b21519 0.13 -1.5
1,443,336 - +0.0
1,443,379 + SM_b21519 0.16 -0.7
1,443,379 + SM_b21519 0.16 -1.3
1,443,380 - SM_b21519 0.16 -0.1
1,443,380 - SM_b21519 0.16 +0.7
1,443,380 - SM_b21519 0.16 -0.1
1,443,571 + SM_b21519 0.29 -1.2
1,443,572 - SM_b21519 0.29 +0.1
1,443,691 + SM_b21519 0.37 +0.3
1,443,692 - SM_b21519 0.38 +0.0
1,443,692 - SM_b21519 0.38 +0.4
1,443,692 - SM_b21519 0.38 +0.3

Or see this region's nucleotide sequence