Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21517 and SM_b21518 are separated by 21 nucleotides SM_b21518 and SM_b21519 are separated by 215 nucleotides
SM_b21517: SM_b21517 - hypothetical protein, at 1,441,331 to 1,442,146
_b21517
SM_b21518: SM_b21518 - hypothetical protein, at 1,442,168 to 1,442,923
_b21518
SM_b21519: SM_b21519 - two-component sensor histidine kinase, at 1,443,139 to 1,444,611
_b21519
Position (kb)
1442
1443 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1441.205 kb on + strand at 1441.209 kb on - strand at 1441.316 kb on + strand at 1441.316 kb on + strand at 1441.317 kb on - strand at 1441.317 kb on - strand at 1441.317 kb on - strand at 1441.332 kb on + strand at 1441.332 kb on + strand at 1441.333 kb on - strand at 1441.333 kb on - strand at 1441.333 kb on - strand at 1441.401 kb on + strand at 1441.401 kb on + strand at 1441.402 kb on - strand at 1441.485 kb on + strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.686 kb on + strand, within SM_b21517 at 1441.687 kb on - strand, within SM_b21517 at 1441.809 kb on + strand, within SM_b21517 at 1441.809 kb on + strand at 1441.917 kb on + strand, within SM_b21517 at 1442.000 kb on + strand, within SM_b21517 at 1442.001 kb on - strand, within SM_b21517 at 1442.025 kb on + strand, within SM_b21517 at 1442.025 kb on + strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.079 kb on - strand at 1442.204 kb on - strand at 1442.224 kb on + strand at 1442.231 kb on + strand at 1442.232 kb on - strand at 1442.232 kb on - strand at 1442.403 kb on + strand, within SM_b21518 at 1442.466 kb on + strand, within SM_b21518 at 1442.466 kb on + strand, within SM_b21518 at 1442.466 kb on + strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.561 kb on + strand, within SM_b21518 at 1442.562 kb on - strand, within SM_b21518 at 1442.562 kb on - strand, within SM_b21518 at 1442.707 kb on + strand, within SM_b21518 at 1442.708 kb on - strand, within SM_b21518 at 1442.835 kb on + strand, within SM_b21518 at 1442.890 kb on + strand at 1442.890 kb on + strand at 1442.891 kb on - strand at 1442.891 kb on - strand at 1443.052 kb on + strand at 1443.052 kb on + strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.093 kb on - strand at 1443.093 kb on - strand at 1443.106 kb on - strand at 1443.144 kb on - strand at 1443.335 kb on + strand, within SM_b21519 at 1443.336 kb on - strand at 1443.379 kb on + strand, within SM_b21519 at 1443.379 kb on + strand, within SM_b21519 at 1443.380 kb on - strand, within SM_b21519 at 1443.380 kb on - strand, within SM_b21519 at 1443.380 kb on - strand, within SM_b21519 at 1443.571 kb on + strand, within SM_b21519 at 1443.572 kb on - strand, within SM_b21519 at 1443.691 kb on + strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,441,205 + -0.8 1,441,209 - -0.4 1,441,316 + +0.6 1,441,316 + +0.5 1,441,317 - +0.1 1,441,317 - -1.2 1,441,317 - +2.6 1,441,332 + +1.3 1,441,332 + +0.6 1,441,333 - +0.0 1,441,333 - +1.1 1,441,333 - +0.1 1,441,401 + -1.9 1,441,401 + -0.0 1,441,402 - +0.6 1,441,485 + SM_b21517 0.19 -0.4 1,441,486 - SM_b21517 0.19 +0.4 1,441,486 - SM_b21517 0.19 +0.0 1,441,486 - SM_b21517 0.19 +0.9 1,441,486 - +3.2 1,441,486 - SM_b21517 0.19 +0.4 1,441,486 - SM_b21517 0.19 -0.2 1,441,686 + SM_b21517 0.44 -0.3 1,441,687 - SM_b21517 0.44 -0.2 1,441,809 + SM_b21517 0.59 +1.2 1,441,809 + +2.6 1,441,917 + SM_b21517 0.72 +0.5 1,442,000 + SM_b21517 0.82 -2.2 1,442,001 - SM_b21517 0.82 -0.2 1,442,025 + SM_b21517 0.85 -1.1 1,442,025 + SM_b21517 0.85 -0.8 1,442,026 - SM_b21517 0.85 +0.6 1,442,026 - SM_b21517 0.85 -1.4 1,442,026 - SM_b21517 0.85 -1.4 1,442,026 - SM_b21517 0.85 -0.6 1,442,079 - +0.5 1,442,204 - -0.4 1,442,224 + +1.2 1,442,231 + +1.6 1,442,232 - +1.3 1,442,232 - +0.7 1,442,403 + SM_b21518 0.31 -0.8 1,442,466 + SM_b21518 0.39 -0.7 1,442,466 + SM_b21518 0.39 -0.1 1,442,466 + SM_b21518 0.39 -0.2 1,442,467 - SM_b21518 0.40 -0.7 1,442,467 - SM_b21518 0.40 -1.7 1,442,467 - SM_b21518 0.40 +2.0 1,442,467 - SM_b21518 0.40 -1.2 1,442,561 + SM_b21518 0.52 +0.2 1,442,562 - SM_b21518 0.52 -0.7 1,442,562 - SM_b21518 0.52 -0.6 1,442,707 + SM_b21518 0.71 -0.2 1,442,708 - SM_b21518 0.71 +0.1 1,442,835 + SM_b21518 0.88 -0.2 1,442,890 + -0.4 1,442,890 + -1.8 1,442,891 - +0.3 1,442,891 - +1.0 1,443,052 + +0.5 1,443,052 + +1.5 1,443,053 - -1.1 1,443,053 - +0.3 1,443,053 - +0.1 1,443,053 - -0.1 1,443,053 - +0.6 1,443,093 - -0.1 1,443,093 - +0.6 1,443,106 - -0.5 1,443,144 - +0.3 1,443,335 + SM_b21519 0.13 -1.5 1,443,336 - +0.0 1,443,379 + SM_b21519 0.16 -0.7 1,443,379 + SM_b21519 0.16 -1.3 1,443,380 - SM_b21519 0.16 -0.1 1,443,380 - SM_b21519 0.16 +0.7 1,443,380 - SM_b21519 0.16 -0.1 1,443,571 + SM_b21519 0.29 -1.2 1,443,572 - SM_b21519 0.29 +0.1 1,443,691 + SM_b21519 0.37 +0.3 1,443,692 - SM_b21519 0.38 +0.0 1,443,692 - SM_b21519 0.38 +0.4 1,443,692 - SM_b21519 0.38 +0.3
Or see this region's nucleotide sequence