Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21277 and SM_b21278 overlap by 4 nucleotides
SM_b21277: SM_b21277 - inosine-uridine preferring nucleoside hydrolase, at 850,786 to 851,709
_b21277
SM_b21278: SM_b21278 - adenine deaminase, at 851,706 to 853,487
_b21278
Position (kb) 850
851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 849.796 kb on + strand at 849.936 kb on + strand at 849.937 kb on - strand at 849.960 kb on + strand at 849.961 kb on - strand at 850.009 kb on + strand at 850.010 kb on - strand at 850.423 kb on + strand at 850.423 kb on + strand at 850.423 kb on + strand at 850.424 kb on - strand at 850.424 kb on - strand at 850.424 kb on - strand at 850.424 kb on - strand at 850.425 kb on + strand at 850.648 kb on + strand at 850.648 kb on + strand at 850.660 kb on - strand at 851.013 kb on + strand, within SM_b21277 at 851.014 kb on - strand, within SM_b21277 at 851.014 kb on - strand, within SM_b21277 at 851.158 kb on - strand, within SM_b21277 at 851.253 kb on + strand, within SM_b21277 at 851.253 kb on + strand, within SM_b21277 at 851.444 kb on - strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.635 kb on + strand at 851.636 kb on - strand at 851.636 kb on - strand at 851.649 kb on - strand at 851.713 kb on + strand at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.973 kb on - strand at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 852.010 kb on - strand, within SM_b21278 at 852.010 kb on - strand, within SM_b21278 at 852.521 kb on + strand, within SM_b21278 at 852.557 kb on + strand, within SM_b21278
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 849,796 + -1.9 849,936 + -0.2 849,937 - -0.0 849,960 + +0.3 849,961 - -0.4 850,009 + -0.0 850,010 - -1.1 850,423 + -3.3 850,423 + +1.9 850,423 + -0.2 850,424 - -0.0 850,424 - -0.4 850,424 - -0.1 850,424 - -0.2 850,425 + +0.7 850,648 + -1.0 850,648 + -0.2 850,660 - -0.6 851,013 + SM_b21277 0.25 +0.9 851,014 - SM_b21277 0.25 +0.5 851,014 - SM_b21277 0.25 +0.1 851,158 - SM_b21277 0.40 -0.3 851,253 + SM_b21277 0.51 -0.6 851,253 + SM_b21277 0.51 +0.9 851,444 - SM_b21277 0.71 -0.4 851,488 + SM_b21277 0.76 +1.6 851,488 + SM_b21277 0.76 -2.1 851,488 + SM_b21277 0.76 +0.7 851,489 - SM_b21277 0.76 +0.4 851,489 - SM_b21277 0.76 -0.5 851,489 - SM_b21277 0.76 +0.5 851,635 + +0.3 851,636 - -0.0 851,636 - +1.6 851,649 - -0.3 851,713 + -0.6 851,972 + SM_b21278 0.15 -0.8 851,972 + SM_b21278 0.15 -0.9 851,972 + SM_b21278 0.15 +0.3 851,972 + SM_b21278 0.15 -0.5 851,972 + SM_b21278 0.15 -0.1 851,972 + SM_b21278 0.15 +0.0 851,972 + SM_b21278 0.15 +0.1 851,972 + SM_b21278 0.15 -0.5 851,972 + SM_b21278 0.15 -0.0 851,973 - +1.6 851,973 - SM_b21278 0.15 -0.6 851,973 - SM_b21278 0.15 +0.2 851,973 - SM_b21278 0.15 +0.1 851,973 - SM_b21278 0.15 +0.6 851,973 - SM_b21278 0.15 +0.6 852,010 - SM_b21278 0.17 +0.6 852,010 - SM_b21278 0.17 +0.3 852,521 + SM_b21278 0.46 +0.8 852,557 + SM_b21278 0.48 -0.1
Or see this region's nucleotide sequence