Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21069

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21068 and SM_b21069 are separated by 316 nucleotidesSM_b21069 and SM_b21070 are separated by 380 nucleotides SM_b21068: SM_b21068 - glycosyltransferase, at 702,645 to 703,658 _b21068 SM_b21069: SM_b21069 - hypothetical protein, at 703,975 to 705,393 _b21069 SM_b21070: SM_b21070 - MPA1 family auxiliary surface saccharide export protein, at 705,774 to 707,672 _b21070 Position (kb) 703 704 705 706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 703.007 kb on + strand, within SM_b21068at 703.105 kb on + strand, within SM_b21068at 703.146 kb on + strand, within SM_b21068at 703.146 kb on + strand, within SM_b21068at 703.251 kb on - strand, within SM_b21068at 703.266 kb on - strand, within SM_b21068at 703.301 kb on + strand, within SM_b21068at 703.301 kb on + strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.302 kb on - strand, within SM_b21068at 703.303 kb on + strand, within SM_b21068at 703.303 kb on + strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.304 kb on - strand, within SM_b21068at 703.305 kb on + strand, within SM_b21068at 703.305 kb on + strand, within SM_b21068at 703.306 kb on - strand, within SM_b21068at 703.362 kb on + strand, within SM_b21068at 703.362 kb on + strand, within SM_b21068at 703.362 kb on + strand, within SM_b21068at 703.363 kb on - strand, within SM_b21068at 703.363 kb on - strand, within SM_b21068at 703.364 kb on + strand, within SM_b21068at 703.365 kb on - strand, within SM_b21068at 703.437 kb on - strand, within SM_b21068at 703.481 kb on + strand, within SM_b21068at 703.481 kb on + strand, within SM_b21068at 703.481 kb on + strand, within SM_b21068at 703.482 kb on - strand, within SM_b21068at 703.482 kb on - strand, within SM_b21068at 703.482 kb on - strand, within SM_b21068at 703.576 kb on + strandat 703.577 kb on - strandat 703.577 kb on - strandat 703.663 kb on + strandat 703.683 kb on + strandat 703.683 kb on + strandat 703.683 kb on + strandat 703.684 kb on - strandat 703.788 kb on + strandat 703.788 kb on + strandat 703.789 kb on - strandat 703.857 kb on - strandat 703.883 kb on + strandat 703.884 kb on - strandat 704.003 kb on + strandat 704.003 kb on + strandat 704.003 kb on + strandat 704.003 kb on + strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.004 kb on - strandat 704.042 kb on + strandat 704.042 kb on + strandat 704.043 kb on - strandat 704.078 kb on - strandat 704.169 kb on - strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.246 kb on + strand, within SM_b21069at 704.247 kb on - strand, within SM_b21069at 704.252 kb on + strand, within SM_b21069at 704.252 kb on + strand, within SM_b21069at 704.253 kb on - strand, within SM_b21069at 704.253 kb on - strand, within SM_b21069at 704.253 kb on - strand, within SM_b21069at 704.368 kb on + strand, within SM_b21069at 704.368 kb on + strand, within SM_b21069at 704.368 kb on + strand, within SM_b21069at 704.413 kb on + strand, within SM_b21069at 704.414 kb on - strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.458 kb on + strand, within SM_b21069at 704.459 kb on - strand, within SM_b21069at 704.459 kb on - strand, within SM_b21069at 704.462 kb on - strand, within SM_b21069at 704.616 kb on + strand, within SM_b21069at 704.617 kb on - strand, within SM_b21069at 704.617 kb on - strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.631 kb on + strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.632 kb on - strand, within SM_b21069at 704.635 kb on + strand, within SM_b21069at 704.635 kb on + strand, within SM_b21069at 704.635 kb on + strand, within SM_b21069at 704.636 kb on - strand, within SM_b21069at 704.757 kb on + strand, within SM_b21069at 704.797 kb on + strand, within SM_b21069at 704.798 kb on - strand, within SM_b21069at 704.804 kb on + strand, within SM_b21069at 704.805 kb on - strand, within SM_b21069at 704.842 kb on + strand, within SM_b21069at 704.843 kb on - strand, within SM_b21069at 704.843 kb on - strand, within SM_b21069at 704.843 kb on - strand, within SM_b21069at 704.866 kb on + strand, within SM_b21069at 704.866 kb on + strand, within SM_b21069at 704.868 kb on + strand, within SM_b21069at 704.868 kb on + strand, within SM_b21069at 704.935 kb on + strand, within SM_b21069at 704.935 kb on + strand, within SM_b21069at 705.055 kb on + strand, within SM_b21069at 705.055 kb on + strand, within SM_b21069at 705.056 kb on - strand, within SM_b21069at 705.056 kb on - strand, within SM_b21069at 705.133 kb on - strand, within SM_b21069at 705.133 kb on - strand, within SM_b21069at 705.133 kb on - strand, within SM_b21069at 705.133 kb on - strand, within SM_b21069at 705.232 kb on + strand, within SM_b21069at 705.233 kb on - strand, within SM_b21069at 705.233 kb on - strand, within SM_b21069at 705.233 kb on - strand, within SM_b21069at 705.280 kb on + strandat 705.281 kb on - strandat 705.281 kb on - strandat 705.281 kb on - strandat 705.306 kb on + strandat 705.306 kb on + strandat 705.306 kb on + strandat 705.307 kb on - strandat 705.307 kb on - strandat 705.342 kb on - strandat 705.364 kb on + strandat 705.457 kb on - strandat 705.465 kb on + strandat 705.521 kb on - strandat 705.523 kb on - strandat 705.532 kb on - strandat 705.541 kb on + strandat 705.541 kb on + strandat 705.541 kb on + strandat 705.600 kb on - strandat 705.600 kb on - strandat 705.640 kb on + strandat 705.640 kb on + strandat 705.641 kb on - strandat 705.712 kb on - strandat 705.712 kb on - strandat 705.712 kb on - strandat 705.723 kb on + strandat 705.723 kb on + strandat 705.724 kb on - strandat 705.724 kb on - strandat 705.724 kb on - strandat 705.778 kb on + strandat 705.778 kb on + strandat 705.778 kb on + strandat 705.778 kb on + strandat 705.819 kb on + strandat 705.819 kb on + strandat 705.886 kb on + strandat 705.887 kb on - strandat 705.944 kb on + strandat 705.971 kb on + strand, within SM_b21070at 706.031 kb on + strand, within SM_b21070at 706.031 kb on + strand, within SM_b21070at 706.031 kb on + strand, within SM_b21070at 706.192 kb on - strand, within SM_b21070at 706.303 kb on + strand, within SM_b21070at 706.303 kb on + strand, within SM_b21070at 706.303 kb on + strand, within SM_b21070at 706.330 kb on + strand, within SM_b21070at 706.344 kb on - strand, within SM_b21070at 706.380 kb on + strand, within SM_b21070at 706.380 kb on + strand, within SM_b21070at 706.380 kb on + strand, within SM_b21070at 706.380 kb on + strand, within SM_b21070at 706.380 kb on + strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.381 kb on - strand, within SM_b21070at 706.386 kb on - strand, within SM_b21070at 706.392 kb on - strand, within SM_b21070at 706.392 kb on - strand, within SM_b21070

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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703,007 + SM_b21068 0.36 -0.6
703,105 + SM_b21068 0.45 +0.2
703,146 + SM_b21068 0.49 +0.3
703,146 + SM_b21068 0.49 -0.1
703,251 - SM_b21068 0.60 +0.8
703,266 - SM_b21068 0.61 +0.1
703,301 + SM_b21068 0.65 -0.1
703,301 + SM_b21068 0.65 -0.1
703,302 - SM_b21068 0.65 +0.8
703,302 - SM_b21068 0.65 -0.5
703,302 - SM_b21068 0.65 +0.2
703,302 - SM_b21068 0.65 -0.2
703,302 - SM_b21068 0.65 -1.2
703,302 - SM_b21068 0.65 -1.4
703,303 + SM_b21068 0.65 +2.3
703,303 + SM_b21068 0.65 -0.1
703,304 - SM_b21068 0.65 -0.4
703,304 - SM_b21068 0.65 +0.2
703,304 - SM_b21068 0.65 +0.0
703,304 - SM_b21068 0.65 +0.8
703,305 + SM_b21068 0.65 +0.2
703,305 + SM_b21068 0.65 +0.4
703,306 - SM_b21068 0.65 +0.1
703,362 + SM_b21068 0.71 +0.6
703,362 + SM_b21068 0.71 +0.3
703,362 + SM_b21068 0.71 -0.2
703,363 - SM_b21068 0.71 +0.4
703,363 - SM_b21068 0.71 +2.3
703,364 + SM_b21068 0.71 -1.4
703,365 - SM_b21068 0.71 +0.4
703,437 - SM_b21068 0.78 +0.1
703,481 + SM_b21068 0.82 -0.3
703,481 + SM_b21068 0.82 -0.2
703,481 + SM_b21068 0.82 -1.8
703,482 - SM_b21068 0.83 +0.0
703,482 - SM_b21068 0.83 -0.7
703,482 - SM_b21068 0.83 -0.2
703,576 + +2.5
703,577 - +0.5
703,577 - -0.9
703,663 + +0.3
703,683 + +0.5
703,683 + +0.5
703,683 + +0.7
703,684 - +1.0
703,788 + -0.1
703,788 + -0.1
703,789 - +0.9
703,857 - -1.3
703,883 + +0.3
703,884 - -0.5
704,003 + -2.4
704,003 + -0.5
704,003 + +2.6
704,003 + -1.7
704,004 - +0.1
704,004 - +0.4
704,004 - +0.6
704,004 - +1.3
704,004 - -1.8
704,004 - -0.5
704,042 + +1.1
704,042 + -1.5
704,043 - -0.2
704,078 - -1.3
704,169 - SM_b21069 0.14 +0.5
704,246 + SM_b21069 0.19 +0.3
704,246 + SM_b21069 0.19 +1.1
704,246 + SM_b21069 0.19 +0.0
704,246 + SM_b21069 0.19 -0.1
704,246 + SM_b21069 0.19 +2.1
704,246 + SM_b21069 0.19 -0.4
704,246 + SM_b21069 0.19 +0.1
704,247 - SM_b21069 0.19 -0.7
704,252 + SM_b21069 0.20 +0.6
704,252 + SM_b21069 0.20 +0.3
704,253 - SM_b21069 0.20 +1.2
704,253 - SM_b21069 0.20 +0.2
704,253 - SM_b21069 0.20 -0.1
704,368 + SM_b21069 0.28 +0.7
704,368 + SM_b21069 0.28 -0.9
704,368 + SM_b21069 0.28 +2.6
704,413 + SM_b21069 0.31 -2.8
704,414 - SM_b21069 0.31 -0.1
704,458 + SM_b21069 0.34 -0.4
704,458 + SM_b21069 0.34 -0.9
704,458 + SM_b21069 0.34 +0.4
704,458 + SM_b21069 0.34 +0.3
704,459 - SM_b21069 0.34 +0.1
704,459 - SM_b21069 0.34 +0.4
704,462 - SM_b21069 0.34 +0.5
704,616 + SM_b21069 0.45 -0.5
704,617 - SM_b21069 0.45 -0.3
704,617 - SM_b21069 0.45 -0.4
704,631 + SM_b21069 0.46 +0.0
704,631 + SM_b21069 0.46 -1.3
704,631 + SM_b21069 0.46 -1.0
704,631 + SM_b21069 0.46 +0.6
704,632 - SM_b21069 0.46 +1.9
704,632 - SM_b21069 0.46 +0.2
704,632 - SM_b21069 0.46 +0.4
704,632 - SM_b21069 0.46 +1.1
704,632 - SM_b21069 0.46 +0.4
704,635 + SM_b21069 0.47 -0.2
704,635 + SM_b21069 0.47 -0.1
704,635 + SM_b21069 0.47 -0.0
704,636 - SM_b21069 0.47 -2.8
704,757 + SM_b21069 0.55 +3.1
704,797 + SM_b21069 0.58 -0.2
704,798 - SM_b21069 0.58 +1.0
704,804 + SM_b21069 0.58 +0.4
704,805 - SM_b21069 0.58 -0.2
704,842 + SM_b21069 0.61 +0.5
704,843 - SM_b21069 0.61 +0.1
704,843 - SM_b21069 0.61 +0.0
704,843 - SM_b21069 0.61 -0.0
704,866 + SM_b21069 0.63 -0.7
704,866 + SM_b21069 0.63 +1.1
704,868 + SM_b21069 0.63 +1.6
704,868 + SM_b21069 0.63 -2.0
704,935 + SM_b21069 0.68 +0.3
704,935 + SM_b21069 0.68 -0.8
705,055 + SM_b21069 0.76 +0.5
705,055 + SM_b21069 0.76 -1.6
705,056 - SM_b21069 0.76 +2.5
705,056 - SM_b21069 0.76 +0.2
705,133 - SM_b21069 0.82 -0.5
705,133 - SM_b21069 0.82 +0.4
705,133 - SM_b21069 0.82 +2.0
705,133 - SM_b21069 0.82 +0.5
705,232 + SM_b21069 0.89 -0.4
705,233 - SM_b21069 0.89 -1.0
705,233 - SM_b21069 0.89 +0.3
705,233 - SM_b21069 0.89 +1.0
705,280 + +0.6
705,281 - +0.9
705,281 - +0.4
705,281 - +0.0
705,306 + +0.4
705,306 + -0.4
705,306 + -1.3
705,307 - -1.0
705,307 - +0.6
705,342 - +2.0
705,364 + -0.1
705,457 - -1.1
705,465 + +0.3
705,521 - -0.3
705,523 - -1.3
705,532 - +0.3
705,541 + -0.4
705,541 + -1.4
705,541 + +0.2
705,600 - +1.1
705,600 - +0.1
705,640 + -0.1
705,640 + +0.9
705,641 - +0.2
705,712 - -0.5
705,712 - +0.4
705,712 - -0.4
705,723 + -0.8
705,723 + +1.6
705,724 - +0.6
705,724 - -0.1
705,724 - +1.8
705,778 + -0.1
705,778 + +0.3
705,778 + +0.6
705,778 + +0.0
705,819 + -0.1
705,819 + +0.2
705,886 + +0.1
705,887 - -0.1
705,944 + -0.7
705,971 + SM_b21070 0.10 +2.4
706,031 + SM_b21070 0.14 +0.2
706,031 + SM_b21070 0.14 -0.8
706,031 + SM_b21070 0.14 +0.1
706,192 - SM_b21070 0.22 -2.0
706,303 + SM_b21070 0.28 +0.3
706,303 + SM_b21070 0.28 +0.2
706,303 + SM_b21070 0.28 -0.7
706,330 + SM_b21070 0.29 +2.3
706,344 - SM_b21070 0.30 -0.9
706,380 + SM_b21070 0.32 +0.4
706,380 + SM_b21070 0.32 +0.7
706,380 + SM_b21070 0.32 +1.2
706,380 + SM_b21070 0.32 -0.2
706,380 + SM_b21070 0.32 +0.0
706,381 - SM_b21070 0.32 -1.0
706,381 - SM_b21070 0.32 +0.1
706,381 - SM_b21070 0.32 +2.1
706,381 - SM_b21070 0.32 +0.4
706,381 - SM_b21070 0.32 -0.9
706,381 - SM_b21070 0.32 +0.5
706,381 - SM_b21070 0.32 +0.9
706,381 - SM_b21070 0.32 +2.7
706,381 - SM_b21070 0.32 -0.2
706,386 - SM_b21070 0.32 -1.0
706,392 - SM_b21070 0.33 +1.1
706,392 - SM_b21070 0.33 -0.1

Or see this region's nucleotide sequence