Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21009 and SM_b21010 are separated by 299 nucleotides SM_b21010 and SM_b21011 are separated by 43 nucleotides
SM_b21009: SM_b21009 - Glycerol kinase (EC 2.7.1.30) (from data) , at 1,242,315 to 1,243,808
_b21009
SM_b21010: SM_b21010 - D-beta-hydroxybutyrate dehydrogenase, at 1,244,108 to 1,244,884
_b21010
SM_b21011: SM_b21011 - xanthine dehydrogenase, at 1,244,928 to 1,246,415
_b21011
Position (kb)
1244
1245 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1243.232 kb on + strand, within SM_b21009 at 1243.237 kb on + strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.239 kb on + strand, within SM_b21009 at 1243.240 kb on - strand, within SM_b21009 at 1243.240 kb on - strand, within SM_b21009 at 1243.320 kb on - strand, within SM_b21009 at 1243.320 kb on - strand, within SM_b21009 at 1243.593 kb on - strand, within SM_b21009 at 1243.796 kb on + strand at 1243.796 kb on + strand at 1243.796 kb on + strand at 1243.797 kb on - strand at 1243.798 kb on + strand at 1243.799 kb on - strand at 1243.799 kb on - strand at 1243.808 kb on + strand at 1243.809 kb on - strand at 1243.809 kb on - strand at 1243.809 kb on - strand at 1243.809 kb on - strand at 1243.867 kb on + strand at 1243.868 kb on - strand at 1243.868 kb on - strand at 1243.928 kb on + strand at 1244.050 kb on - strand at 1244.564 kb on + strand, within SM_b21010 at 1244.564 kb on + strand, within SM_b21010 at 1244.564 kb on + strand, within SM_b21010 at 1244.565 kb on - strand, within SM_b21010 at 1244.584 kb on + strand, within SM_b21010 at 1244.584 kb on + strand, within SM_b21010 at 1244.584 kb on + strand, within SM_b21010 at 1244.584 kb on + strand at 1244.584 kb on + strand, within SM_b21010 at 1244.585 kb on - strand, within SM_b21010 at 1244.585 kb on - strand, within SM_b21010 at 1244.661 kb on - strand, within SM_b21010 at 1244.692 kb on - strand, within SM_b21010 at 1245.358 kb on + strand, within SM_b21011 at 1245.559 kb on + strand, within SM_b21011 at 1245.560 kb on - strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.793 kb on - strand, within SM_b21011 at 1245.866 kb on + strand, within SM_b21011
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,243,232 + SM_b21009 0.61 +0.2 1,243,237 + SM_b21009 0.62 +0.1 1,243,238 - SM_b21009 0.62 -1.0 1,243,238 - SM_b21009 0.62 +0.1 1,243,238 - SM_b21009 0.62 +0.6 1,243,238 - SM_b21009 0.62 -0.4 1,243,239 + SM_b21009 0.62 +1.4 1,243,240 - SM_b21009 0.62 +0.1 1,243,240 - SM_b21009 0.62 -2.5 1,243,320 - SM_b21009 0.67 +0.2 1,243,320 - SM_b21009 0.67 -0.2 1,243,593 - SM_b21009 0.86 -0.8 1,243,796 + +0.7 1,243,796 + -1.2 1,243,796 + +1.6 1,243,797 - +0.5 1,243,798 + +0.2 1,243,799 - -1.6 1,243,799 - -1.4 1,243,808 + +0.2 1,243,809 - -1.5 1,243,809 - -0.9 1,243,809 - +0.1 1,243,809 - +0.9 1,243,867 + -0.9 1,243,868 - +0.4 1,243,868 - -0.1 1,243,928 + -2.0 1,244,050 - +1.2 1,244,564 + SM_b21010 0.59 +0.5 1,244,564 + SM_b21010 0.59 +0.4 1,244,564 + SM_b21010 0.59 +0.2 1,244,565 - SM_b21010 0.59 -0.1 1,244,584 + SM_b21010 0.61 -0.6 1,244,584 + SM_b21010 0.61 -1.4 1,244,584 + SM_b21010 0.61 -0.8 1,244,584 + +1.6 1,244,584 + SM_b21010 0.61 -0.3 1,244,585 - SM_b21010 0.61 -1.8 1,244,585 - SM_b21010 0.61 +0.5 1,244,661 - SM_b21010 0.71 -1.6 1,244,692 - SM_b21010 0.75 -0.7 1,245,358 + SM_b21011 0.29 -0.3 1,245,559 + SM_b21011 0.42 +3.2 1,245,560 - SM_b21011 0.42 -0.0 1,245,761 + SM_b21011 0.56 +0.8 1,245,761 + SM_b21011 0.56 -0.7 1,245,761 + SM_b21011 0.56 -0.0 1,245,762 - SM_b21011 0.56 -0.3 1,245,762 - SM_b21011 0.56 -0.8 1,245,762 - SM_b21011 0.56 +0.3 1,245,792 + SM_b21011 0.58 -0.9 1,245,792 + SM_b21011 0.58 -0.8 1,245,792 + SM_b21011 0.58 -0.7 1,245,793 - SM_b21011 0.58 +0.6 1,245,866 + SM_b21011 0.63 +0.0
Or see this region's nucleotide sequence