Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20729

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20726 and SM_b20727 are separated by 74 nucleotidesSM_b20727 and SM_b20728 are separated by 82 nucleotidesSM_b20728 and SM_b20729 are separated by 108 nucleotidesSM_b20729 and SM_b20745 are separated by 459 nucleotides SM_b20726: SM_b20726 - hypothetical protein, at 1,530,777 to 1,532,294 _b20726 SM_b20727: SM_b20727 - hypothetical protein, at 1,532,369 to 1,532,602 _b20727 SM_b20728: SM_b20728 - hypothetical protein, at 1,532,685 to 1,532,894 _b20728 SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416 _b20729 SM_b20745: SM_b20745 - glutatmine synthetase II protein, at 1,533,876 to 1,534,910 _b20745 Position (kb) 1533 1534Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1532.820 kb on - strand, within SM_b20728at 1532.820 kb on - strand, within SM_b20728at 1532.820 kb on - strand, within SM_b20728at 1533.042 kb on + strandat 1533.394 kb on + strandat 1533.395 kb on - strandat 1533.395 kb on - strandat 1533.395 kb on - strandat 1533.395 kb on - strandat 1533.528 kb on + strandat 1533.528 kb on + strandat 1533.529 kb on - strandat 1533.536 kb on + strandat 1533.536 kb on + strandat 1533.536 kb on + strandat 1533.536 kb on + strandat 1533.537 kb on - strandat 1533.537 kb on - strandat 1533.537 kb on - strandat 1533.537 kb on - strandat 1533.538 kb on + strandat 1533.539 kb on - strandat 1533.539 kb on - strandat 1533.539 kb on - strandat 1533.549 kb on + strandat 1533.549 kb on + strandat 1533.549 kb on + strandat 1533.550 kb on - strandat 1533.579 kb on + strandat 1533.643 kb on + strandat 1533.643 kb on + strandat 1533.644 kb on - strandat 1533.672 kb on + strandat 1533.673 kb on - strandat 1533.675 kb on - strandat 1533.675 kb on - strandat 1533.757 kb on + strandat 1533.758 kb on - strandat 1533.848 kb on + strandat 1533.848 kb on + strandat 1533.983 kb on - strand, within SM_b20745at 1533.991 kb on + strand, within SM_b20745at 1534.117 kb on + strand, within SM_b20745at 1534.117 kb on + strand, within SM_b20745at 1534.117 kb on + strand, within SM_b20745at 1534.174 kb on + strand, within SM_b20745at 1534.201 kb on + strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.202 kb on - strand, within SM_b20745at 1534.315 kb on + strand, within SM_b20745at 1534.315 kb on + strand, within SM_b20745

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,532,820 - SM_b20728 0.64 -0.8
1,532,820 - SM_b20728 0.64 -1.5
1,532,820 - SM_b20728 0.64 -3.1
1,533,042 + -0.3
1,533,394 + +0.0
1,533,395 - +1.2
1,533,395 - -1.7
1,533,395 - -2.2
1,533,395 - -3.0
1,533,528 + +1.2
1,533,528 + -0.3
1,533,529 - +0.3
1,533,536 + -0.6
1,533,536 + +0.1
1,533,536 + -1.2
1,533,536 + -0.6
1,533,537 - -1.5
1,533,537 - -0.5
1,533,537 - +0.1
1,533,537 - +1.3
1,533,538 + -1.1
1,533,539 - +1.0
1,533,539 - +0.5
1,533,539 - +0.1
1,533,549 + +0.3
1,533,549 + +0.9
1,533,549 + +0.1
1,533,550 - -0.8
1,533,579 + +0.7
1,533,643 + +1.6
1,533,643 + +0.5
1,533,644 - +4.4
1,533,672 + -0.5
1,533,673 - -0.5
1,533,675 - +0.5
1,533,675 - +1.9
1,533,757 + +0.2
1,533,758 - -1.3
1,533,848 + +1.2
1,533,848 + +0.4
1,533,983 - SM_b20745 0.10 +1.6
1,533,991 + SM_b20745 0.11 +1.6
1,534,117 + SM_b20745 0.23 -1.9
1,534,117 + SM_b20745 0.23 +1.1
1,534,117 + SM_b20745 0.23 +2.6
1,534,174 + SM_b20745 0.29 -1.8
1,534,201 + SM_b20745 0.31 -0.4
1,534,202 - SM_b20745 0.31 +0.3
1,534,202 - SM_b20745 0.31 +0.2
1,534,202 - SM_b20745 0.31 -0.1
1,534,202 - SM_b20745 0.31 -0.0
1,534,315 + SM_b20745 0.42 -2.4
1,534,315 + SM_b20745 0.42 -0.3

Or see this region's nucleotide sequence