Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20674 and SM_b20675 are separated by 32 nucleotides SM_b20675 and SM_b20676 are separated by 25 nucleotides SM_b20676 and SM_b20677 are separated by 98 nucleotides SM_b20677 and SM_b20678 are separated by 47 nucleotides
SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133
_b20674
SM_b20675: SM_b20675 - hypothetical protein, at 1,477,166 to 1,477,741
_b20675
SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687
_b20676
SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277
_b20677
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
Position (kb)
1477
1478
1479 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1476.777 kb on + strand, within SM_b20674 at 1477.079 kb on - strand at 1477.427 kb on + strand, within SM_b20675 at 1477.428 kb on - strand, within SM_b20675 at 1477.473 kb on + strand, within SM_b20675 at 1477.536 kb on + strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.537 kb on - strand, within SM_b20675 at 1477.602 kb on + strand, within SM_b20675 at 1477.602 kb on + strand, within SM_b20675 at 1477.602 kb on + strand, within SM_b20675 at 1477.603 kb on - strand, within SM_b20675 at 1477.603 kb on - strand, within SM_b20675 at 1477.632 kb on + strand, within SM_b20675 at 1477.633 kb on - strand, within SM_b20675 at 1477.658 kb on - strand, within SM_b20675 at 1477.888 kb on + strand, within SM_b20676 at 1477.888 kb on + strand, within SM_b20676 at 1477.888 kb on + strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1478.043 kb on + strand, within SM_b20676 at 1478.044 kb on - strand, within SM_b20676 at 1478.339 kb on + strand, within SM_b20676 at 1478.744 kb on - strand at 1478.793 kb on + strand at 1478.794 kb on - strand at 1478.794 kb on - strand at 1478.806 kb on - strand at 1478.806 kb on - strand at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.088 kb on - strand, within SM_b20677 at 1479.272 kb on + strand at 1479.273 kb on - strand at 1479.273 kb on - strand at 1479.480 kb on + strand, within SM_b20678 at 1479.568 kb on + strand, within SM_b20678
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,476,777 + SM_b20674 0.65 -1.0 1,477,079 - -0.1 1,477,427 + SM_b20675 0.45 -0.3 1,477,428 - SM_b20675 0.45 -0.9 1,477,473 + SM_b20675 0.53 +1.0 1,477,536 + SM_b20675 0.64 -1.1 1,477,537 - SM_b20675 0.64 -0.3 1,477,537 - SM_b20675 0.64 -0.3 1,477,537 - SM_b20675 0.64 -1.1 1,477,537 - SM_b20675 0.64 -1.5 1,477,602 + SM_b20675 0.76 +1.6 1,477,602 + SM_b20675 0.76 -1.8 1,477,602 + SM_b20675 0.76 -0.6 1,477,603 - SM_b20675 0.76 -0.4 1,477,603 - SM_b20675 0.76 +0.2 1,477,632 + SM_b20675 0.81 +0.0 1,477,633 - SM_b20675 0.81 +2.7 1,477,658 - SM_b20675 0.85 -0.4 1,477,888 + SM_b20676 0.13 -0.2 1,477,888 + SM_b20676 0.13 +3.2 1,477,888 + SM_b20676 0.13 +0.4 1,477,889 - SM_b20676 0.13 -2.1 1,477,889 - SM_b20676 0.13 +0.4 1,477,889 - SM_b20676 0.13 -0.4 1,478,043 + SM_b20676 0.30 +1.0 1,478,044 - SM_b20676 0.30 -1.0 1,478,339 + SM_b20676 0.62 -1.1 1,478,744 - -1.2 1,478,793 + +0.2 1,478,794 - -0.9 1,478,794 - -0.3 1,478,806 - -0.3 1,478,806 - +0.6 1,478,836 + SM_b20677 0.10 +0.2 1,478,836 + SM_b20677 0.10 -0.7 1,478,836 + SM_b20677 0.10 +1.4 1,478,836 + SM_b20677 0.10 -0.0 1,478,837 - SM_b20677 0.10 -0.4 1,478,837 - SM_b20677 0.10 -2.1 1,479,087 + SM_b20677 0.61 -0.2 1,479,087 + SM_b20677 0.61 -0.8 1,479,088 - SM_b20677 0.61 +1.7 1,479,272 + +0.7 1,479,273 - -2.5 1,479,273 - -1.8 1,479,480 + SM_b20678 0.12 +1.0 1,479,568 + SM_b20678 0.19 +0.3
Or see this region's nucleotide sequence