Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20636

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21706 and SM_b20636 are separated by 455 nucleotidesSM_b20636 and SM_b21630 are separated by 262 nucleotides SM_b21706: SM_b21706 - LacI family transcriptional regulator, at 1,655,215 to 1,656,018 _b21706 SM_b20636: SM_b20636 - transposase of insertion sequence ISRm19 protein, at 1,656,474 to 1,657,487 _b20636 SM_b21630: SM_b21630 - hypothetical protein, at 1,657,750 to 1,658,991 _b21630 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1655.783 kb on + strand, within SM_b21706at 1655.783 kb on + strand, within SM_b21706at 1655.784 kb on - strand, within SM_b21706at 1655.784 kb on - strand, within SM_b21706at 1655.784 kb on - strand, within SM_b21706at 1655.920 kb on + strand, within SM_b21706at 1655.921 kb on - strand, within SM_b21706at 1655.921 kb on - strand, within SM_b21706at 1655.921 kb on - strand, within SM_b21706at 1656.002 kb on + strandat 1656.002 kb on + strandat 1656.002 kb on + strandat 1656.002 kb on + strandat 1656.003 kb on - strandat 1656.003 kb on - strandat 1656.003 kb on - strandat 1656.382 kb on - strandat 1656.416 kb on + strandat 1656.417 kb on - strandat 1656.471 kb on - strandat 1656.471 kb on - strandat 1656.476 kb on - strandat 1657.627 kb on + strandat 1657.627 kb on + strandat 1657.696 kb on - strandat 1657.696 kb on - strandat 1657.700 kb on - strandat 1657.730 kb on - strandat 1657.730 kb on - strandat 1657.961 kb on + strand, within SM_b21630at 1657.962 kb on - strand, within SM_b21630at 1657.988 kb on + strand, within SM_b21630at 1657.989 kb on - strand, within SM_b21630at 1658.198 kb on + strand, within SM_b21630at 1658.198 kb on + strand, within SM_b21630at 1658.198 kb on + strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.283 kb on + strand, within SM_b21630at 1658.284 kb on - strand, within SM_b21630at 1658.284 kb on - strand, within SM_b21630at 1658.284 kb on - strand, within SM_b21630at 1658.286 kb on - strand, within SM_b21630at 1658.376 kb on - strand, within SM_b21630at 1658.376 kb on - strand, within SM_b21630at 1658.433 kb on - strand, within SM_b21630

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,655,783 + SM_b21706 0.71 -0.9
1,655,783 + SM_b21706 0.71 +0.4
1,655,784 - SM_b21706 0.71 +0.5
1,655,784 - SM_b21706 0.71 -0.0
1,655,784 - SM_b21706 0.71 +0.4
1,655,920 + SM_b21706 0.88 -1.0
1,655,921 - SM_b21706 0.88 +0.5
1,655,921 - SM_b21706 0.88 +0.3
1,655,921 - SM_b21706 0.88 -0.1
1,656,002 + -0.1
1,656,002 + +0.5
1,656,002 + -0.1
1,656,002 + -0.9
1,656,003 - -0.8
1,656,003 - -1.0
1,656,003 - -1.2
1,656,382 - +0.9
1,656,416 + -0.2
1,656,417 - +1.4
1,656,471 - +0.0
1,656,471 - -0.1
1,656,476 - +1.0
1,657,627 + -0.2
1,657,627 + -0.4
1,657,696 - +0.2
1,657,696 - -0.8
1,657,700 - -0.1
1,657,730 - +1.3
1,657,730 - +0.8
1,657,961 + SM_b21630 0.17 -2.1
1,657,962 - SM_b21630 0.17 -0.5
1,657,988 + SM_b21630 0.19 +0.6
1,657,989 - SM_b21630 0.19 +3.6
1,658,198 + SM_b21630 0.36 +0.2
1,658,198 + SM_b21630 0.36 -0.2
1,658,198 + SM_b21630 0.36 -1.1
1,658,199 - SM_b21630 0.36 +0.6
1,658,199 - SM_b21630 0.36 -0.4
1,658,199 - SM_b21630 0.36 -1.7
1,658,199 - SM_b21630 0.36 -1.3
1,658,283 + SM_b21630 0.43 -0.2
1,658,284 - SM_b21630 0.43 -0.5
1,658,284 - SM_b21630 0.43 -0.4
1,658,284 - SM_b21630 0.43 -1.0
1,658,286 - SM_b21630 0.43 +0.1
1,658,376 - SM_b21630 0.50 -1.7
1,658,376 - SM_b21630 0.50 +1.4
1,658,433 - SM_b21630 0.55 -0.2

Or see this region's nucleotide sequence