Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20632

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20631 and SM_b20632 are separated by 19 nucleotidesSM_b20632 and SM_b20633 overlap by 4 nucleotides SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939 _b20631 SM_b20632: SM_b20632 - sugar uptake ABC transporter permease, at 1,651,959 to 1,652,822 _b20632 SM_b20633: SM_b20633 - sugar uptake ABC transporter permease, at 1,652,819 to 1,653,736 _b20633 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1650.969 kb on + strand, within SM_b20631at 1650.969 kb on + strand, within SM_b20631at 1650.970 kb on - strand, within SM_b20631at 1650.972 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.023 kb on + strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.024 kb on - strand, within SM_b20631at 1651.089 kb on + strand, within SM_b20631at 1651.089 kb on + strand, within SM_b20631at 1651.120 kb on - strand, within SM_b20631at 1651.125 kb on + strand, within SM_b20631at 1651.125 kb on + strand, within SM_b20631at 1651.125 kb on + strand, within SM_b20631at 1651.126 kb on - strand, within SM_b20631at 1651.126 kb on - strand, within SM_b20631at 1651.126 kb on - strand, within SM_b20631at 1651.192 kb on - strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.197 kb on + strand, within SM_b20631at 1651.198 kb on - strand, within SM_b20631at 1651.198 kb on - strand, within SM_b20631at 1651.198 kb on - strand, within SM_b20631at 1651.374 kb on + strand, within SM_b20631at 1651.420 kb on - strand, within SM_b20631at 1651.611 kb on + strand, within SM_b20631at 1651.612 kb on - strand, within SM_b20631at 1651.612 kb on - strand, within SM_b20631at 1651.675 kb on - strand, within SM_b20631at 1651.994 kb on - strandat 1651.994 kb on - strandat 1652.126 kb on - strand, within SM_b20632at 1652.359 kb on + strand, within SM_b20632at 1652.360 kb on - strand, within SM_b20632at 1652.360 kb on - strand, within SM_b20632at 1652.952 kb on + strand, within SM_b20633at 1652.952 kb on + strand, within SM_b20633at 1652.953 kb on - strand, within SM_b20633at 1653.003 kb on + strand, within SM_b20633at 1653.003 kb on + strand, within SM_b20633at 1653.004 kb on - strand, within SM_b20633at 1653.238 kb on + strand, within SM_b20633at 1653.287 kb on - strand, within SM_b20633at 1653.479 kb on - strand, within SM_b20633at 1653.481 kb on - strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.538 kb on - strand, within SM_b20633at 1653.538 kb on - strand, within SM_b20633at 1653.658 kb on + strandat 1653.659 kb on - strandat 1653.660 kb on + strandat 1653.660 kb on + strandat 1653.660 kb on + strandat 1653.661 kb on - strandat 1653.795 kb on + strandat 1653.795 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,650,969 + SM_b20631 0.50 -1.5
1,650,969 + SM_b20631 0.50 +0.1
1,650,970 - SM_b20631 0.50 +0.7
1,650,972 + SM_b20631 0.50 +2.2
1,651,023 + SM_b20631 0.52 +0.1
1,651,023 + SM_b20631 0.52 -1.9
1,651,023 + SM_b20631 0.52 +0.4
1,651,023 + SM_b20631 0.52 +0.5
1,651,023 + SM_b20631 0.52 +0.5
1,651,023 + SM_b20631 0.52 +2.2
1,651,023 + SM_b20631 0.52 -0.2
1,651,024 - SM_b20631 0.52 -0.2
1,651,024 - SM_b20631 0.52 -3.1
1,651,024 - SM_b20631 0.52 -0.8
1,651,024 - SM_b20631 0.52 +0.5
1,651,089 + SM_b20631 0.56 -1.5
1,651,089 + SM_b20631 0.56 +0.1
1,651,120 - SM_b20631 0.57 +2.3
1,651,125 + SM_b20631 0.58 -0.1
1,651,125 + SM_b20631 0.58 -0.4
1,651,125 + SM_b20631 0.58 +0.9
1,651,126 - SM_b20631 0.58 -0.2
1,651,126 - SM_b20631 0.58 -0.0
1,651,126 - SM_b20631 0.58 +0.2
1,651,192 - SM_b20631 0.61 +0.2
1,651,197 + SM_b20631 0.61 -3.2
1,651,197 + SM_b20631 0.61 -1.2
1,651,197 + SM_b20631 0.61 -0.8
1,651,197 + SM_b20631 0.61 +0.3
1,651,198 - SM_b20631 0.61 +0.2
1,651,198 - SM_b20631 0.61 -0.5
1,651,198 - SM_b20631 0.61 +0.0
1,651,374 + SM_b20631 0.71 -3.1
1,651,420 - SM_b20631 0.73 +0.7
1,651,611 + SM_b20631 0.83 +0.5
1,651,612 - SM_b20631 0.83 +0.6
1,651,612 - SM_b20631 0.83 -0.4
1,651,675 - SM_b20631 0.86 +1.0
1,651,994 - +0.1
1,651,994 - +1.0
1,652,126 - SM_b20632 0.19 -0.8
1,652,359 + SM_b20632 0.46 -1.0
1,652,360 - SM_b20632 0.46 -0.1
1,652,360 - SM_b20632 0.46 -0.3
1,652,952 + SM_b20633 0.14 -0.6
1,652,952 + SM_b20633 0.14 +1.4
1,652,953 - SM_b20633 0.15 +0.4
1,653,003 + SM_b20633 0.20 +0.9
1,653,003 + SM_b20633 0.20 -0.8
1,653,004 - SM_b20633 0.20 -0.6
1,653,238 + SM_b20633 0.46 +1.0
1,653,287 - SM_b20633 0.51 +1.2
1,653,479 - SM_b20633 0.72 +0.2
1,653,481 - SM_b20633 0.72 +0.2
1,653,537 + SM_b20633 0.78 +0.3
1,653,537 + SM_b20633 0.78 +2.8
1,653,537 + SM_b20633 0.78 -0.2
1,653,537 + SM_b20633 0.78 +0.7
1,653,537 + SM_b20633 0.78 +0.2
1,653,538 - SM_b20633 0.78 +0.8
1,653,538 - SM_b20633 0.78 -0.2
1,653,658 + -0.9
1,653,659 - +0.7
1,653,660 + +0.8
1,653,660 + +0.2
1,653,660 + +0.7
1,653,661 - -0.2
1,653,795 + -0.1
1,653,795 + +0.2

Or see this region's nucleotide sequence