Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20504 and SM_b20505 are separated by 270 nucleotides SM_b20505 and SM_b20506 are separated by 43 nucleotides SM_b20506 and SM_b20507 are separated by 2 nucleotides
SM_b20504: SM_b20504 - sugar ABC transporter substrate-binding protein, at 525,801 to 526,802
_b20504
SM_b20505: SM_b20505 - trifolitoxin immunity protein, at 527,073 to 527,861
_b20505
SM_b20506: SM_b20506 - L-arabinose transporter permease, at 527,905 to 528,858
_b20506
SM_b20507: SM_b20507 - L-arabinose transporter ATP-binding protein, at 528,861 to 530,387
_b20507
Position (kb) 527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 526.213 kb on + strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.214 kb on - strand, within SM_b20504 at 526.214 kb on - strand, within SM_b20504 at 526.349 kb on - strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.397 kb on + strand, within SM_b20504 at 526.397 kb on + strand, within SM_b20504 at 526.426 kb on + strand, within SM_b20504 at 526.427 kb on - strand, within SM_b20504 at 526.432 kb on - strand, within SM_b20504 at 526.603 kb on + strand, within SM_b20504 at 526.622 kb on - strand, within SM_b20504 at 526.622 kb on - strand, within SM_b20504 at 526.685 kb on - strand, within SM_b20504 at 526.718 kb on - strand at 526.928 kb on + strand at 526.938 kb on + strand at 526.939 kb on - strand at 527.017 kb on - strand at 527.017 kb on - strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.061 kb on + strand at 527.062 kb on - strand at 527.062 kb on - strand at 527.188 kb on + strand, within SM_b20505 at 527.188 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.333 kb on - strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.644 kb on + strand, within SM_b20505 at 527.658 kb on + strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.857 kb on + strand at 527.857 kb on + strand at 527.857 kb on + strand at 527.858 kb on - strand at 527.858 kb on - strand at 527.858 kb on - strand at 527.860 kb on - strand at 527.887 kb on + strand at 527.937 kb on + strand at 527.937 kb on + strand at 527.938 kb on - strand at 527.984 kb on + strand at 527.990 kb on + strand at 527.990 kb on + strand at 527.991 kb on - strand at 527.991 kb on - strand at 527.991 kb on - strand at 528.053 kb on - strand, within SM_b20506 at 528.202 kb on + strand, within SM_b20506 at 528.203 kb on - strand, within SM_b20506 at 528.316 kb on - strand, within SM_b20506 at 528.470 kb on - strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.589 kb on + strand, within SM_b20506 at 528.640 kb on + strand, within SM_b20506
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 526,213 + SM_b20504 0.41 -0.3 526,213 + SM_b20504 0.41 +0.8 526,213 + SM_b20504 0.41 -0.2 526,214 - SM_b20504 0.41 -0.6 526,214 - SM_b20504 0.41 -0.1 526,349 - SM_b20504 0.55 -2.4 526,393 + SM_b20504 0.59 -3.1 526,393 + SM_b20504 0.59 +0.4 526,393 + SM_b20504 0.59 +0.8 526,393 + SM_b20504 0.59 -0.7 526,393 + SM_b20504 0.59 -1.0 526,393 + SM_b20504 0.59 +0.3 526,393 + SM_b20504 0.59 +0.6 526,393 + SM_b20504 0.59 -0.4 526,394 - SM_b20504 0.59 +0.5 526,394 - SM_b20504 0.59 -1.2 526,394 - SM_b20504 0.59 -1.1 526,394 - SM_b20504 0.59 -2.7 526,394 - SM_b20504 0.59 -0.7 526,397 + SM_b20504 0.59 -0.7 526,397 + SM_b20504 0.59 +3.0 526,426 + SM_b20504 0.62 -3.0 526,427 - SM_b20504 0.62 +0.8 526,432 - SM_b20504 0.63 -0.1 526,603 + SM_b20504 0.80 -0.7 526,622 - SM_b20504 0.82 -0.1 526,622 - SM_b20504 0.82 +1.7 526,685 - SM_b20504 0.88 -1.7 526,718 - -0.4 526,928 + -1.4 526,938 + +0.1 526,939 - -0.3 527,017 - +0.2 527,017 - +0.5 527,042 + -1.1 527,043 - +1.7 527,061 + -0.6 527,062 - -0.6 527,062 - +0.0 527,188 + SM_b20505 0.15 +1.0 527,188 + SM_b20505 0.15 +0.6 527,274 + SM_b20505 0.25 +2.6 527,274 + SM_b20505 0.25 -1.4 527,274 + SM_b20505 0.25 -0.4 527,274 + SM_b20505 0.25 +0.9 527,275 - SM_b20505 0.26 +0.5 527,275 - SM_b20505 0.26 -0.3 527,275 - SM_b20505 0.26 +0.8 527,333 - SM_b20505 0.33 -0.1 527,353 + SM_b20505 0.35 -0.4 527,353 + SM_b20505 0.35 +1.3 527,644 + SM_b20505 0.72 +0.0 527,658 + SM_b20505 0.74 +2.4 527,741 - SM_b20505 0.85 +1.6 527,741 - SM_b20505 0.85 -0.2 527,741 - SM_b20505 0.85 -0.0 527,741 - SM_b20505 0.85 -1.5 527,741 - SM_b20505 0.85 -0.4 527,759 + SM_b20505 0.87 +2.1 527,759 + SM_b20505 0.87 +0.9 527,759 + SM_b20505 0.87 +1.3 527,857 + -2.1 527,857 + -1.4 527,857 + -1.5 527,858 - -0.1 527,858 - +1.8 527,858 - +1.2 527,860 - -1.4 527,887 + +0.7 527,937 + -0.4 527,937 + -0.0 527,938 - +2.8 527,984 + +0.1 527,990 + +0.5 527,990 + -1.8 527,991 - -0.5 527,991 - -0.7 527,991 - -0.6 528,053 - SM_b20506 0.16 +0.3 528,202 + SM_b20506 0.31 -0.3 528,203 - SM_b20506 0.31 -0.2 528,316 - SM_b20506 0.43 -0.9 528,470 - SM_b20506 0.59 +0.7 528,496 + SM_b20506 0.62 +1.0 528,496 + SM_b20506 0.62 -0.3 528,496 + SM_b20506 0.62 -0.4 528,589 + SM_b20506 0.72 +0.1 528,640 + SM_b20506 0.77 -0.4
Or see this region's nucleotide sequence