Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20077 and SM_b20078 overlap by 1 nucleotides SM_b20078 and SM_b20079 are separated by 832 nucleotides
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380
_b20078
SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431
_b20079
Position (kb)
86
87
88 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 85.826 kb on - strand, within SM_b20077 at 86.136 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.477 kb on - strand, within SM_b20077 at 86.484 kb on - strand, within SM_b20077 at 86.540 kb on + strand, within SM_b20077 at 86.872 kb on + strand, within SM_b20078 at 86.872 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.061 kb on - strand, within SM_b20078 at 87.188 kb on + strand, within SM_b20078 at 87.275 kb on + strand, within SM_b20078 at 87.276 kb on - strand, within SM_b20078 at 87.357 kb on + strand at 87.437 kb on + strand at 87.542 kb on - strand at 87.542 kb on - strand at 87.553 kb on + strand at 87.612 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.619 kb on - strand at 87.619 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.642 kb on + strand at 87.748 kb on - strand at 87.750 kb on - strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.759 kb on + strand at 87.761 kb on + strand at 87.762 kb on - strand at 87.762 kb on - strand at 87.762 kb on - strand at 87.927 kb on + strand at 88.010 kb on + strand at 88.010 kb on + strand at 88.011 kb on - strand at 88.011 kb on - strand at 88.012 kb on + strand at 88.049 kb on + strand at 88.049 kb on + strand at 88.049 kb on + strand at 88.049 kb on + strand at 88.050 kb on - strand at 88.140 kb on - strand at 88.199 kb on - strand at 88.254 kb on - strand at 88.254 kb on - strand at 88.265 kb on + strand at 88.364 kb on - strand at 88.364 kb on - strand at 88.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 85,826 - SM_b20077 0.45 -0.4 86,136 + SM_b20077 0.63 -0.2 86,445 + SM_b20077 0.82 -0.5 86,445 + SM_b20077 0.82 -0.0 86,446 - SM_b20077 0.82 +3.7 86,446 - SM_b20077 0.82 -1.3 86,446 - SM_b20077 0.82 +0.3 86,446 - SM_b20077 0.82 -0.7 86,446 - SM_b20077 0.82 -0.7 86,477 - SM_b20077 0.84 +0.8 86,484 - SM_b20077 0.84 -0.3 86,540 + SM_b20077 0.88 -2.5 86,872 + SM_b20078 0.20 +2.0 86,872 + SM_b20078 0.20 +0.1 87,060 + SM_b20078 0.50 +0.2 87,060 + SM_b20078 0.50 -0.6 87,060 + SM_b20078 0.50 +0.0 87,061 - SM_b20078 0.50 +0.5 87,188 + SM_b20078 0.70 +1.4 87,275 + SM_b20078 0.83 -0.7 87,276 - SM_b20078 0.83 +2.7 87,357 + -0.3 87,437 + -3.7 87,542 - +0.2 87,542 - -0.8 87,553 + -0.5 87,612 + +4.7 87,618 + +0.1 87,618 + +1.3 87,618 + -0.8 87,619 - +0.2 87,619 - +0.8 87,625 - -0.1 87,625 - +1.1 87,625 - +0.6 87,642 + -0.3 87,748 - -0.1 87,750 - +1.4 87,759 + -1.5 87,759 + +0.8 87,759 + +0.7 87,759 + +0.1 87,759 + +0.3 87,761 + +0.7 87,762 - +0.9 87,762 - +0.6 87,762 - +0.7 87,927 + -1.7 88,010 + +0.0 88,010 + +0.6 88,011 - -0.4 88,011 - -0.4 88,012 + -0.8 88,049 + -0.9 88,049 + -0.3 88,049 + +0.1 88,049 + +0.2 88,050 - -1.3 88,140 - -2.0 88,199 - -1.6 88,254 - +0.6 88,254 - +0.3 88,265 + -0.7 88,364 - -0.5 88,364 - +0.5 88,364 - +1.7
Or see this region's nucleotide sequence