Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20005

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20004 and SM_b20005 are separated by 115 nucleotidesSM_b20005 and SM_b20006 are separated by 185 nucleotides SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173 _b20004 SM_b20005: SM_b20005 - glutathione S-transferase, at 8,289 to 8,900 _b20005 SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039 _b20006 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.549 kb on + strand, within SM_b20004at 7.806 kb on - strand, within SM_b20004at 7.813 kb on + strand, within SM_b20004at 7.980 kb on + strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 8.092 kb on + strandat 8.093 kb on - strandat 8.093 kb on - strandat 8.298 kb on + strandat 8.298 kb on + strandat 8.298 kb on + strandat 8.299 kb on - strandat 8.499 kb on + strand, within SM_b20005at 8.764 kb on - strand, within SM_b20005at 8.770 kb on - strand, within SM_b20005at 8.774 kb on - strand, within SM_b20005at 8.812 kb on - strand, within SM_b20005at 9.500 kb on - strand, within SM_b20006at 9.561 kb on - strand, within SM_b20006at 9.695 kb on + strand, within SM_b20006

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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7,549 + SM_b20004 0.31 -1.5
7,806 - SM_b20004 0.59 +0.1
7,813 + SM_b20004 0.60 -0.0
7,980 + SM_b20004 0.79 -2.1
7,981 - SM_b20004 0.79 -0.1
7,981 - SM_b20004 0.79 -0.8
7,981 - SM_b20004 0.79 +0.2
7,981 - SM_b20004 0.79 +0.7
8,092 + +0.7
8,093 - +0.4
8,093 - +0.6
8,298 + +0.1
8,298 + +0.9
8,298 + +2.0
8,299 - +0.6
8,499 + SM_b20005 0.34 +0.8
8,764 - SM_b20005 0.78 +1.4
8,770 - SM_b20005 0.79 -0.9
8,774 - SM_b20005 0.79 -1.4
8,812 - SM_b20005 0.85 -0.0
9,500 - SM_b20006 0.43 +0.1
9,561 - SM_b20006 0.50 -0.2
9,695 + SM_b20006 0.64 -0.8

Or see this region's nucleotide sequence