Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36865

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
3,722,246	+		RR42_RS36855	0.86	-0.5
3,722,256	+		RR42_RS36855	0.87	+0.4
3,722,256	+		RR42_RS36855	0.87	-0.1
3,722,256	+		RR42_RS36855	0.87	-1.3
3,722,256	+		RR42_RS36855	0.87	-0.2
3,722,256	+		RR42_RS36855	0.87	+0.4
3,722,257	-		RR42_RS36855	0.87	-0.0
3,722,257	-		RR42_RS36855	0.87	+0.1
3,722,333	-				+0.4
3,722,333	-				-0.4
3,722,333	-				+1.6
3,722,389	+				-0.2
3,722,389	+				-0.5
3,722,390	-				-0.0
3,722,390	-				+0.1
3,722,390	-				-0.0
3,722,390	-				+0.7
3,722,461	-				-0.7
3,722,517	+				-0.3
3,722,518	-				-0.5
3,722,518	-				-0.5
3,722,518	-				-0.6
3,722,518	-				+0.9
3,722,519	+				+0.1
3,722,519	+				+0.1
3,722,520	-				-0.3
3,722,549	+				-0.4
3,722,551	+				+0.6
3,722,552	-				-0.3
3,722,555	+				-0.4
3,722,555	+				+0.0
3,722,555	+				+0.7
3,722,568	+				+0.1
3,722,569	-		RR42_RS36860	0.10	-1.0
3,722,579	+		RR42_RS36860	0.12	-0.3
3,722,590	-		RR42_RS36860	0.14	-0.4
3,722,600	+		RR42_RS36860	0.16	-0.3
3,722,601	-		RR42_RS36860	0.16	-0.4
3,722,601	-		RR42_RS36860	0.16	+1.4
3,722,601	-		RR42_RS36860	0.16	-0.2
3,722,601	-		RR42_RS36860	0.16	-0.2
3,722,785	-		RR42_RS36860	0.52	-0.9
3,722,809	+		RR42_RS36860	0.56	+0.9
3,722,912	+		RR42_RS36860	0.76	-0.6
3,722,992	+				+0.1
3,723,007	+				+0.1
3,723,007	+				-0.1
3,723,038	+				+0.2
3,723,038	+				+0.2
3,723,038	+				-1.0
3,723,038	+				-0.4
3,723,039	-				-1.4
3,723,039	-				-0.3
3,723,039	-				-2.1
3,723,089	+				+0.2
3,723,089	+				+0.3
3,723,097	+				+0.7
3,723,098	-				+0.6
3,723,109	+				-0.2
3,723,110	-				-0.9
3,723,130	-				-0.1
3,723,174	-				-2.1
3,723,198	-				+0.3
3,723,198	-				-1.2
3,723,348	+				-0.5
3,723,349	-				-1.9
3,723,361	+				-0.1
3,723,433	-		RR42_RS36865	0.10	+0.2
3,723,433	-		RR42_RS36865	0.10	-1.5
3,723,433	-		RR42_RS36865	0.10	+0.7
3,723,447	+		RR42_RS36865	0.11	+1.2
3,723,448	-		RR42_RS36865	0.11	+0.8
3,723,578	-		RR42_RS36865	0.18	-0.1
3,723,594	+		RR42_RS36865	0.19	+0.0
3,723,594	+		RR42_RS36865	0.19	+0.4
3,723,594	+		RR42_RS36865	0.19	+0.2
3,723,594	+		RR42_RS36865	0.19	-0.0
3,723,595	-		RR42_RS36865	0.19	-0.9
3,723,595	-		RR42_RS36865	0.19	+0.7
3,723,628	+		RR42_RS36865	0.21	-0.5
3,723,628	+		RR42_RS36865	0.21	-0.5
3,723,628	+		RR42_RS36865	0.21	+0.7
3,723,628	+		RR42_RS36865	0.21	-0.3
3,723,629	-		RR42_RS36865	0.21	-0.5
3,723,654	-		RR42_RS36865	0.22	-0.2
3,723,697	-		RR42_RS36865	0.24	+1.3
3,723,697	-		RR42_RS36865	0.24	-0.1
3,723,697	-		RR42_RS36865	0.24	-0.0
3,723,740	-		RR42_RS36865	0.27	+0.7
3,723,830	-		RR42_RS36865	0.31	+0.8
3,723,830	-		RR42_RS36865	0.31	+0.1
3,723,830	-		RR42_RS36865	0.31	+1.5
3,723,841	+		RR42_RS36865	0.32	-0.1
3,723,863	+		RR42_RS36865	0.33	-0.7
3,723,863	+		RR42_RS36865	0.33	+0.7
3,723,863	+		RR42_RS36865	0.33	+0.1
3,723,864	-		RR42_RS36865	0.33	-0.1
3,723,905	+		RR42_RS36865	0.35	-1.8
3,723,906	-		RR42_RS36865	0.35	+0.7
3,723,974	-		RR42_RS36865	0.39	-1.9
3,723,991	-		RR42_RS36865	0.40	-0.3
3,723,991	-		RR42_RS36865	0.40	+0.5
3,724,148	+		RR42_RS36865	0.48	+0.5
3,724,148	+		RR42_RS36865	0.48	+0.3
3,724,148	+		RR42_RS36865	0.48	+0.6
3,724,159	+		RR42_RS36865	0.49	-1.3
3,724,159	+		RR42_RS36865	0.49	+1.4
3,724,160	-		RR42_RS36865	0.49	+0.6
3,724,202	+		RR42_RS36865	0.51	+0.3
3,724,202	+		RR42_RS36865	0.51	-0.3
3,724,202	+		RR42_RS36865	0.51	-0.7
3,724,203	-		RR42_RS36865	0.51	-0.3
3,724,301	+		RR42_RS36865	0.56	+0.3
3,724,325	+		RR42_RS36865	0.58	+0.6
3,724,347	+		RR42_RS36865	0.59	+0.7
3,724,347	+		RR42_RS36865	0.59	+2.8
3,724,348	-		RR42_RS36865	0.59	-0.1
3,724,349	+		RR42_RS36865	0.59	+0.1
3,724,349	+		RR42_RS36865	0.59	+0.1
3,724,350	-		RR42_RS36865	0.59	+0.1
3,724,350	-		RR42_RS36865	0.59	+0.3
3,724,350	-		RR42_RS36865	0.59	+0.6
3,724,395	+		RR42_RS36865	0.61	+0.1
3,724,395	+		RR42_RS36865	0.61	-0.1
3,724,559	-		RR42_RS36865	0.70	-0.9
3,724,772	+		RR42_RS36865	0.81	-0.3
3,724,773	-		RR42_RS36865	0.81	-0.2
3,724,773	-		RR42_RS36865	0.81	+0.3
3,724,996	+				-0.9
3,724,996	+				+0.8
3,724,997	-				-0.4
3,725,042	+				+0.3
3,725,042	+				+0.0
3,725,043	-				+0.5
3,725,043	-				-1.0
3,725,043	-				+0.5
3,725,179	-				-0.5
3,725,179	-				-1.7
3,725,248	+				-0.5
3,725,249	-				+0.6
3,725,249	-				+0.7
3,725,249	-				-2.5
3,725,306	+				+1.1
3,725,306	+				+1.8
3,725,306	+				-1.2
3,725,325	+				+2.7
3,725,326	-				+0.3
3,725,326	-				-0.2
3,725,326	-				+0.7
3,725,327	+				+1.4
3,725,327	+				+0.4
3,725,327	+				+0.3
3,725,328	-				-0.2
3,725,348	+				+0.1
3,725,349	-				-0.0
3,725,525	+				+0.4
3,725,526	-				+0.3
3,725,535	+				+0.8
3,725,535	+				+0.6
3,725,679	-		RR42_RS36870	0.11	+0.5
3,725,695	+		RR42_RS36870	0.12	-0.9
3,725,777	+		RR42_RS36870	0.14	+0.2
3,725,880	+		RR42_RS36870	0.16	-0.3
3,725,880	+		RR42_RS36870	0.16	-0.0
3,725,880	+		RR42_RS36870	0.16	+1.1
3,725,880	+		RR42_RS36870	0.16	+1.5
3,725,893	+		RR42_RS36870	0.17	+0.6
3,725,893	+		RR42_RS36870	0.17	+0.3
3,726,032	+		RR42_RS36870	0.20	-0.9
3,726,032	+		RR42_RS36870	0.20	-0.5
3,726,074	+		RR42_RS36870	0.21	-0.7
3,726,074	+		RR42_RS36870	0.21	+1.5
3,726,074	+		RR42_RS36870	0.21	+0.8
3,726,075	-		RR42_RS36870	0.21	-0.5
3,726,078	+		RR42_RS36870	0.21	-0.0
3,726,078	+		RR42_RS36870	0.21	-0.5
3,726,078	+		RR42_RS36870	0.21	+0.0
3,726,078	+		RR42_RS36870	0.21	+0.5
3,726,078	+		RR42_RS36870	0.21	+0.7
3,726,078	+		RR42_RS36870	0.21	+0.2
3,726,078	+		RR42_RS36870	0.21	+0.1
3,726,078	+		RR42_RS36870	0.21	+0.9
3,726,078	+		RR42_RS36870	0.21	+0.8
3,726,078	+		RR42_RS36870	0.21	+0.0
3,726,078	+		RR42_RS36870	0.21	-0.9
3,726,078	+		RR42_RS36870	0.21	+1.6
3,726,078	+		RR42_RS36870	0.21	+0.3
3,726,079	-		RR42_RS36870	0.22	-1.7
3,726,079	-		RR42_RS36870	0.22	+1.7
3,726,079	-		RR42_RS36870	0.22	-1.5
3,726,079	-		RR42_RS36870	0.22	-1.4
3,726,079	-		RR42_RS36870	0.22	-1.5
3,726,079	-		RR42_RS36870	0.22	-0.0
3,726,118	+		RR42_RS36870	0.23	+0.3
3,726,119	-		RR42_RS36870	0.23	+0.7