Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24250

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24245 and RR42_RS24250 are separated by 255 nucleotidesRR42_RS24250 and RR42_RS24255 overlap by 4 nucleotides RR42_RS24245: RR42_RS24245 - porin, at 765,255 to 766,322 _RS24245 RR42_RS24250: RR42_RS24250 - (2Fe-2S)-binding protein, at 766,578 to 767,666 _RS24250 RR42_RS24255: RR42_RS24255 - hypothetical protein, at 767,663 to 768,619 _RS24255 Position (kb) 766 767 768Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 765.586 kb on - strand, within RR42_RS24245at 765.595 kb on + strand, within RR42_RS24245at 765.595 kb on + strand, within RR42_RS24245at 765.595 kb on + strand, within RR42_RS24245at 765.596 kb on - strand, within RR42_RS24245at 765.596 kb on - strand, within RR42_RS24245at 765.632 kb on + strand, within RR42_RS24245at 765.633 kb on - strand, within RR42_RS24245at 765.634 kb on + strand, within RR42_RS24245at 765.657 kb on - strand, within RR42_RS24245at 765.657 kb on - strand, within RR42_RS24245at 765.660 kb on + strand, within RR42_RS24245at 765.660 kb on + strand, within RR42_RS24245at 765.660 kb on + strand, within RR42_RS24245at 765.661 kb on - strand, within RR42_RS24245at 765.661 kb on - strand, within RR42_RS24245at 765.661 kb on - strand, within RR42_RS24245at 765.696 kb on + strand, within RR42_RS24245at 765.731 kb on + strand, within RR42_RS24245at 765.732 kb on - strand, within RR42_RS24245at 765.735 kb on + strand, within RR42_RS24245at 765.840 kb on + strand, within RR42_RS24245at 765.840 kb on + strand, within RR42_RS24245at 765.841 kb on - strand, within RR42_RS24245at 765.935 kb on + strand, within RR42_RS24245at 765.935 kb on + strand, within RR42_RS24245at 765.935 kb on + strand, within RR42_RS24245at 765.958 kb on - strand, within RR42_RS24245at 765.966 kb on + strand, within RR42_RS24245at 765.966 kb on + strand, within RR42_RS24245at 765.967 kb on - strand, within RR42_RS24245at 765.967 kb on - strand, within RR42_RS24245at 765.967 kb on - strand, within RR42_RS24245at 765.971 kb on + strand, within RR42_RS24245at 766.028 kb on + strand, within RR42_RS24245at 766.028 kb on + strand, within RR42_RS24245at 766.038 kb on + strand, within RR42_RS24245at 766.038 kb on + strand, within RR42_RS24245at 766.039 kb on - strand, within RR42_RS24245at 766.039 kb on - strand, within RR42_RS24245at 766.095 kb on + strand, within RR42_RS24245at 766.095 kb on + strand, within RR42_RS24245at 766.095 kb on + strand, within RR42_RS24245at 766.158 kb on + strand, within RR42_RS24245at 766.158 kb on + strand, within RR42_RS24245at 766.159 kb on - strand, within RR42_RS24245at 766.159 kb on - strand, within RR42_RS24245at 766.159 kb on - strand, within RR42_RS24245at 766.159 kb on - strand, within RR42_RS24245at 766.176 kb on - strand, within RR42_RS24245at 766.185 kb on + strand, within RR42_RS24245at 766.186 kb on - strand, within RR42_RS24245at 766.186 kb on - strand, within RR42_RS24245at 766.229 kb on + strandat 766.229 kb on + strandat 766.229 kb on + strandat 766.230 kb on - strandat 766.249 kb on + strandat 766.253 kb on + strandat 766.308 kb on - strandat 766.308 kb on - strandat 766.415 kb on + strandat 766.428 kb on + strandat 766.429 kb on - strandat 766.429 kb on - strandat 766.429 kb on - strandat 766.445 kb on + strandat 766.577 kb on + strandat 766.589 kb on - strandat 766.600 kb on - strandat 766.600 kb on - strandat 766.600 kb on - strandat 766.779 kb on + strand, within RR42_RS24250at 766.814 kb on + strand, within RR42_RS24250at 766.814 kb on + strand, within RR42_RS24250at 766.815 kb on - strand, within RR42_RS24250at 766.858 kb on + strand, within RR42_RS24250at 766.859 kb on - strand, within RR42_RS24250at 766.859 kb on - strand, within RR42_RS24250at 766.863 kb on - strand, within RR42_RS24250at 766.988 kb on + strand, within RR42_RS24250at 766.988 kb on + strand, within RR42_RS24250at 767.018 kb on - strand, within RR42_RS24250at 767.118 kb on - strand, within RR42_RS24250at 767.252 kb on + strand, within RR42_RS24250at 767.339 kb on + strand, within RR42_RS24250at 767.339 kb on + strand, within RR42_RS24250at 767.340 kb on - strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.368 kb on - strand, within RR42_RS24250at 767.370 kb on + strand, within RR42_RS24250at 767.371 kb on - strand, within RR42_RS24250at 767.371 kb on - strand, within RR42_RS24250at 767.391 kb on + strand, within RR42_RS24250at 767.391 kb on + strand, within RR42_RS24250at 767.391 kb on + strand, within RR42_RS24250at 767.392 kb on - strand, within RR42_RS24250at 767.392 kb on - strand, within RR42_RS24250at 767.499 kb on + strand, within RR42_RS24250at 767.525 kb on + strand, within RR42_RS24250at 767.525 kb on + strand, within RR42_RS24250at 767.525 kb on + strand, within RR42_RS24250at 767.526 kb on - strand, within RR42_RS24250at 767.526 kb on - strand, within RR42_RS24250at 767.526 kb on - strand, within RR42_RS24250at 767.528 kb on + strand, within RR42_RS24250at 767.528 kb on + strand, within RR42_RS24250at 767.625 kb on - strandat 767.625 kb on - strandat 767.671 kb on + strandat 767.672 kb on - strandat 767.672 kb on - strandat 767.672 kb on - strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.707 kb on - strandat 767.707 kb on - strandat 767.707 kb on - strandat 767.707 kb on - strandat 767.718 kb on + strandat 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.823 kb on - strand, within RR42_RS24255at 768.019 kb on + strand, within RR42_RS24255at 768.020 kb on - strand, within RR42_RS24255at 768.080 kb on + strand, within RR42_RS24255at 768.081 kb on - strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.156 kb on - strand, within RR42_RS24255at 768.203 kb on - strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.446 kb on + strand, within RR42_RS24255at 768.446 kb on + strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.525 kb on + strandat 768.525 kb on + strandat 768.526 kb on - strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.565 kb on - strandat 768.565 kb on - strandat 768.565 kb on - strandat 768.565 kb on - strandat 768.583 kb on + strandat 768.584 kb on - strandat 768.586 kb on - strandat 768.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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765,586 - RR42_RS24245 0.31 +0.7
765,595 + RR42_RS24245 0.32 +0.3
765,595 + RR42_RS24245 0.32 -0.2
765,595 + RR42_RS24245 0.32 -0.4
765,596 - RR42_RS24245 0.32 +1.8
765,596 - RR42_RS24245 0.32 -0.7
765,632 + RR42_RS24245 0.35 +0.5
765,633 - RR42_RS24245 0.35 +0.8
765,634 + RR42_RS24245 0.35 -0.2
765,657 - RR42_RS24245 0.38 +1.0
765,657 - RR42_RS24245 0.38 -0.3
765,660 + RR42_RS24245 0.38 -0.2
765,660 + RR42_RS24245 0.38 +0.1
765,660 + RR42_RS24245 0.38 +1.6
765,661 - RR42_RS24245 0.38 +0.0
765,661 - RR42_RS24245 0.38 -0.1
765,661 - RR42_RS24245 0.38 -0.3
765,696 + RR42_RS24245 0.41 -0.1
765,731 + RR42_RS24245 0.45 -0.9
765,732 - RR42_RS24245 0.45 +0.4
765,735 + RR42_RS24245 0.45 +0.5
765,840 + RR42_RS24245 0.55 -0.4
765,840 + RR42_RS24245 0.55 -0.6
765,841 - RR42_RS24245 0.55 -1.1
765,935 + RR42_RS24245 0.64 +0.5
765,935 + RR42_RS24245 0.64 +0.1
765,935 + RR42_RS24245 0.64 +0.0
765,958 - RR42_RS24245 0.66 +0.5
765,966 + RR42_RS24245 0.67 -0.0
765,966 + RR42_RS24245 0.67 +0.2
765,967 - RR42_RS24245 0.67 +0.2
765,967 - RR42_RS24245 0.67 +0.0
765,967 - RR42_RS24245 0.67 -0.2
765,971 + RR42_RS24245 0.67 +0.9
766,028 + RR42_RS24245 0.72 +0.3
766,028 + RR42_RS24245 0.72 +0.6
766,038 + RR42_RS24245 0.73 +0.3
766,038 + RR42_RS24245 0.73 +0.5
766,039 - RR42_RS24245 0.73 +0.3
766,039 - RR42_RS24245 0.73 +1.3
766,095 + RR42_RS24245 0.79 +0.9
766,095 + RR42_RS24245 0.79 +0.5
766,095 + RR42_RS24245 0.79 -0.5
766,158 + RR42_RS24245 0.85 +0.4
766,158 + RR42_RS24245 0.85 +0.7
766,159 - RR42_RS24245 0.85 -0.8
766,159 - RR42_RS24245 0.85 -0.7
766,159 - RR42_RS24245 0.85 +0.7
766,159 - RR42_RS24245 0.85 +0.5
766,176 - RR42_RS24245 0.86 -0.5
766,185 + RR42_RS24245 0.87 +0.7
766,186 - RR42_RS24245 0.87 -0.6
766,186 - RR42_RS24245 0.87 +1.0
766,229 + +0.2
766,229 + -2.0
766,229 + -1.6
766,230 - -0.3
766,249 + -0.6
766,253 + +0.3
766,308 - -1.0
766,308 - +0.6
766,415 + +0.5
766,428 + -0.7
766,429 - -0.0
766,429 - +1.0
766,429 - -0.9
766,445 + +0.2
766,577 + +2.5
766,589 - -0.8
766,600 - -0.5
766,600 - +1.1
766,600 - -0.6
766,779 + RR42_RS24250 0.18 -0.7
766,814 + RR42_RS24250 0.22 +0.3
766,814 + RR42_RS24250 0.22 +0.9
766,815 - RR42_RS24250 0.22 +0.7
766,858 + RR42_RS24250 0.26 +0.6
766,859 - RR42_RS24250 0.26 +0.1
766,859 - RR42_RS24250 0.26 +0.7
766,863 - RR42_RS24250 0.26 +1.1
766,988 + RR42_RS24250 0.38 -0.5
766,988 + RR42_RS24250 0.38 -0.7
767,018 - RR42_RS24250 0.40 -0.0
767,118 - RR42_RS24250 0.50 +0.2
767,252 + RR42_RS24250 0.62 -0.8
767,339 + RR42_RS24250 0.70 -0.2
767,339 + RR42_RS24250 0.70 +0.0
767,340 - RR42_RS24250 0.70 -0.7
767,367 + RR42_RS24250 0.72 +0.1
767,367 + RR42_RS24250 0.72 -0.6
767,367 + RR42_RS24250 0.72 -0.3
767,367 + RR42_RS24250 0.72 +0.6
767,368 - RR42_RS24250 0.73 +0.0
767,370 + RR42_RS24250 0.73 +0.4
767,371 - RR42_RS24250 0.73 +0.1
767,371 - RR42_RS24250 0.73 +0.2
767,391 + RR42_RS24250 0.75 +0.2
767,391 + RR42_RS24250 0.75 -1.0
767,391 + RR42_RS24250 0.75 +2.7
767,392 - RR42_RS24250 0.75 -0.4
767,392 - RR42_RS24250 0.75 +0.1
767,499 + RR42_RS24250 0.85 -0.2
767,525 + RR42_RS24250 0.87 -0.3
767,525 + RR42_RS24250 0.87 -0.8
767,525 + RR42_RS24250 0.87 +0.0
767,526 - RR42_RS24250 0.87 -0.2
767,526 - RR42_RS24250 0.87 +0.0
767,526 - RR42_RS24250 0.87 +0.6
767,528 + RR42_RS24250 0.87 -0.6
767,528 + RR42_RS24250 0.87 -0.5
767,625 - +0.8
767,625 - +0.1
767,671 + +0.3
767,672 - -0.3
767,672 - +0.7
767,672 - -0.9
767,706 + +0.9
767,706 + -0.3
767,706 + -0.7
767,706 + +0.0
767,706 + -0.2
767,707 - +0.7
767,707 - -0.3
767,707 - -0.7
767,707 - -0.3
767,718 + +0.0
767,815 - RR42_RS24255 0.16 -0.7
767,815 - RR42_RS24255 0.16 +0.0
767,815 - RR42_RS24255 0.16 +0.4
767,815 - RR42_RS24255 0.16 -0.4
767,815 - RR42_RS24255 0.16 -0.2
767,815 - RR42_RS24255 0.16 -0.1
767,815 - RR42_RS24255 0.16 +0.6
767,823 - RR42_RS24255 0.17 -0.2
768,019 + RR42_RS24255 0.37 +0.3
768,020 - RR42_RS24255 0.37 -0.3
768,080 + RR42_RS24255 0.44 +0.2
768,081 - RR42_RS24255 0.44 -0.9
768,155 + RR42_RS24255 0.51 +0.2
768,155 + RR42_RS24255 0.51 -3.2
768,155 + RR42_RS24255 0.51 +0.4
768,155 + RR42_RS24255 0.51 +1.2
768,156 - RR42_RS24255 0.52 -1.1
768,203 - RR42_RS24255 0.56 -1.1
768,227 + RR42_RS24255 0.59 -0.7
768,227 + RR42_RS24255 0.59 -0.5
768,227 + RR42_RS24255 0.59 +1.5
768,227 + RR42_RS24255 0.59 +0.3
768,227 + RR42_RS24255 0.59 +0.6
768,446 + RR42_RS24255 0.82 -0.3
768,446 + RR42_RS24255 0.82 +0.1
768,447 - RR42_RS24255 0.82 -1.6
768,447 - RR42_RS24255 0.82 +1.4
768,447 - RR42_RS24255 0.82 -1.4
768,447 - RR42_RS24255 0.82 +0.2
768,525 + +0.6
768,525 + -0.6
768,526 - +0.7
768,564 + +0.0
768,564 + +0.5
768,564 + +0.9
768,564 + +0.9
768,565 - -0.4
768,565 - +0.2
768,565 - +0.4
768,565 - +1.2
768,583 + -0.2
768,584 - -0.9
768,586 - +0.2
768,617 + +0.2

Or see this region's nucleotide sequence