Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21395 and RR42_RS21400 are separated by 124 nucleotides RR42_RS21400 and RR42_RS21405 are separated by 102 nucleotides
RR42_RS21395: RR42_RS21395 - MFS transporter, at 129,834 to 130,835
_RS21395
RR42_RS21400: RR42_RS21400 - prolyl-tRNA synthetase, at 130,960 to 131,433
_RS21400
RR42_RS21405: RR42_RS21405 - LysR family transcriptional regulator, at 131,536 to 132,486
_RS21405
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 130.618 kb on - strand, within RR42_RS21395 at 130.774 kb on + strand at 130.775 kb on - strand at 130.775 kb on - strand at 130.775 kb on - strand at 130.911 kb on + strand at 130.962 kb on - strand at 130.962 kb on - strand at 130.962 kb on - strand at 131.102 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.266 kb on + strand, within RR42_RS21400 at 131.266 kb on + strand, within RR42_RS21400 at 131.267 kb on - strand, within RR42_RS21400 at 131.270 kb on + strand, within RR42_RS21400 at 131.271 kb on - strand, within RR42_RS21400 at 131.360 kb on + strand, within RR42_RS21400 at 131.361 kb on - strand, within RR42_RS21400 at 131.361 kb on - strand, within RR42_RS21400 at 131.452 kb on + strand at 131.453 kb on - strand at 131.453 kb on - strand at 131.491 kb on + strand at 131.494 kb on + strand at 131.494 kb on + strand at 131.494 kb on + strand at 131.495 kb on - strand at 131.495 kb on - strand at 131.496 kb on + strand at 131.496 kb on + strand at 131.497 kb on - strand at 131.645 kb on + strand, within RR42_RS21405 at 131.668 kb on - strand, within RR42_RS21405 at 131.668 kb on - strand, within RR42_RS21405 at 131.668 kb on - strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.700 kb on - strand, within RR42_RS21405 at 131.753 kb on + strand, within RR42_RS21405 at 131.754 kb on - strand, within RR42_RS21405 at 131.754 kb on - strand, within RR42_RS21405 at 131.754 kb on - strand, within RR42_RS21405 at 131.979 kb on - strand, within RR42_RS21405 at 132.137 kb on + strand, within RR42_RS21405 at 132.193 kb on - strand, within RR42_RS21405 at 132.386 kb on + strand, within RR42_RS21405 at 132.386 kb on + strand, within RR42_RS21405 at 132.387 kb on - strand, within RR42_RS21405 at 132.387 kb on - strand, within RR42_RS21405 at 132.519 kb on - strand at 132.556 kb on + strand at 132.557 kb on - strand at 132.557 kb on - strand at 132.610 kb on + strand at 132.610 kb on + strand at 132.611 kb on - strand at 132.611 kb on - strand at 132.683 kb on + strand at 132.684 kb on - strand at 132.684 kb on - strand at 132.706 kb on + strand at 132.707 kb on - strand at 132.831 kb on + strand at 132.860 kb on + strand at 132.861 kb on - strand at 132.928 kb on + strand at 132.929 kb on - strand at 132.929 kb on - strand at 133.070 kb on + strand at 133.229 kb on + strand at 133.230 kb on - strand at 133.275 kb on + strand at 133.275 kb on + strand at 133.407 kb on + strand at 133.407 kb on + strand at 133.407 kb on + strand at 133.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 130,618 - RR42_RS21395 0.78 +0.3 130,774 + -0.5 130,775 - -1.3 130,775 - -0.0 130,775 - -0.0 130,911 + -0.5 130,962 - -0.2 130,962 - -0.1 130,962 - -0.2 131,102 + RR42_RS21400 0.30 -0.5 131,106 + RR42_RS21400 0.31 +1.1 131,106 + RR42_RS21400 0.31 +0.7 131,106 + RR42_RS21400 0.31 +0.2 131,106 + RR42_RS21400 0.31 +0.8 131,107 - RR42_RS21400 0.31 +0.7 131,107 - RR42_RS21400 0.31 -0.9 131,107 - RR42_RS21400 0.31 +0.3 131,107 - RR42_RS21400 0.31 +0.5 131,107 - RR42_RS21400 0.31 -0.2 131,107 - RR42_RS21400 0.31 +0.3 131,107 - RR42_RS21400 0.31 +0.5 131,107 - RR42_RS21400 0.31 -0.6 131,266 + RR42_RS21400 0.65 -1.0 131,266 + RR42_RS21400 0.65 +0.3 131,267 - RR42_RS21400 0.65 -0.5 131,270 + RR42_RS21400 0.65 -0.4 131,271 - RR42_RS21400 0.66 -0.2 131,360 + RR42_RS21400 0.84 -0.3 131,361 - RR42_RS21400 0.85 +0.3 131,361 - RR42_RS21400 0.85 +0.2 131,452 + -0.7 131,453 - -0.2 131,453 - -0.9 131,491 + -0.8 131,494 + -0.4 131,494 + -0.3 131,494 + -0.0 131,495 - -0.4 131,495 - -0.1 131,496 + +0.5 131,496 + +1.0 131,497 - -0.3 131,645 + RR42_RS21405 0.11 -1.2 131,668 - RR42_RS21405 0.14 -0.1 131,668 - RR42_RS21405 0.14 +0.8 131,668 - RR42_RS21405 0.14 +0.3 131,669 + RR42_RS21405 0.14 +0.3 131,669 + RR42_RS21405 0.14 -0.2 131,669 + RR42_RS21405 0.14 -0.7 131,669 + RR42_RS21405 0.14 +0.4 131,669 + RR42_RS21405 0.14 -0.1 131,669 + RR42_RS21405 0.14 +0.3 131,670 - RR42_RS21405 0.14 -1.5 131,670 - RR42_RS21405 0.14 -0.3 131,670 - RR42_RS21405 0.14 -0.3 131,670 - RR42_RS21405 0.14 -0.1 131,700 - RR42_RS21405 0.17 +0.0 131,753 + RR42_RS21405 0.23 -1.0 131,754 - RR42_RS21405 0.23 -3.3 131,754 - RR42_RS21405 0.23 -0.7 131,754 - RR42_RS21405 0.23 -0.4 131,979 - RR42_RS21405 0.47 +0.7 132,137 + RR42_RS21405 0.63 -0.7 132,193 - RR42_RS21405 0.69 -0.4 132,386 + RR42_RS21405 0.89 -0.3 132,386 + RR42_RS21405 0.89 -0.2 132,387 - RR42_RS21405 0.89 -0.8 132,387 - RR42_RS21405 0.89 +0.9 132,519 - -0.3 132,556 + +0.4 132,557 - +0.1 132,557 - -0.9 132,610 + +1.1 132,610 + +0.2 132,611 - -0.3 132,611 - -0.0 132,683 + -0.9 132,684 - -0.4 132,684 - +0.7 132,706 + -1.2 132,707 - +1.1 132,831 + -0.6 132,860 + +1.5 132,861 - +0.3 132,928 + +0.3 132,929 - -1.2 132,929 - -1.6 133,070 + -1.9 133,229 + -0.5 133,230 - +0.1 133,275 + -0.5 133,275 + -0.1 133,407 + +0.8 133,407 + +0.2 133,407 + +0.8 133,408 - +0.9
Or see this region's nucleotide sequence