Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21285

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21280 and RR42_RS21285 are separated by 510 nucleotidesRR42_RS21285 and RR42_RS21290 are separated by 35 nucleotidesRR42_RS21290 and RR42_RS21295 overlap by 4 nucleotides RR42_RS21280: RR42_RS21280 - L-lactate permease, at 99,858 to 101,600 _RS21280 RR42_RS21285: RR42_RS21285 - L-lactate dehydrogenase, LutB subunit (from data), at 102,111 to 103,541 _RS21285 RR42_RS21290: RR42_RS21290 - L-lactate dehydrogenase, LutC subunit (from data), at 103,577 to 104,281 _RS21290 RR42_RS21295: RR42_RS21295 - L-lactate dehydrogenase, LutA subunit (from data), at 104,278 to 105,066 _RS21295 Position (kb) 102 103 104Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 101.315 kb on - strand, within RR42_RS21280at 101.329 kb on + strand, within RR42_RS21280at 101.377 kb on + strand, within RR42_RS21280at 101.428 kb on + strandat 101.568 kb on + strandat 101.569 kb on - strandat 101.569 kb on - strandat 101.578 kb on + strandat 101.701 kb on + strandat 101.701 kb on + strandat 101.701 kb on + strandat 101.701 kb on + strandat 102.070 kb on + strandat 102.071 kb on - strandat 102.112 kb on + strandat 102.167 kb on + strandat 102.534 kb on - strand, within RR42_RS21285at 102.534 kb on - strand, within RR42_RS21285at 102.565 kb on + strand, within RR42_RS21285at 102.565 kb on + strand, within RR42_RS21285at 102.565 kb on + strand, within RR42_RS21285at 102.565 kb on + strand, within RR42_RS21285at 102.637 kb on + strand, within RR42_RS21285at 102.733 kb on + strand, within RR42_RS21285at 102.734 kb on - strand, within RR42_RS21285at 103.013 kb on - strand, within RR42_RS21285at 103.028 kb on + strand, within RR42_RS21285at 103.123 kb on + strand, within RR42_RS21285at 103.124 kb on - strand, within RR42_RS21285at 103.171 kb on + strand, within RR42_RS21285at 103.574 kb on + strandat 103.574 kb on + strandat 103.575 kb on - strandat 103.575 kb on - strandat 103.616 kb on - strandat 103.695 kb on - strand, within RR42_RS21290at 103.695 kb on - strand, within RR42_RS21290at 103.779 kb on + strand, within RR42_RS21290at 103.889 kb on - strand, within RR42_RS21290at 104.175 kb on + strand, within RR42_RS21290at 104.175 kb on + strand, within RR42_RS21290at 104.175 kb on + strand, within RR42_RS21290at 104.176 kb on - strand, within RR42_RS21290at 104.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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101,315 - RR42_RS21280 0.84 -5.2
101,329 + RR42_RS21280 0.84 -2.5
101,377 + RR42_RS21280 0.87 -3.3
101,428 + -4.6
101,568 + -5.0
101,569 - -3.2
101,569 - -2.6
101,578 + -3.5
101,701 + -1.8
101,701 + -3.2
101,701 + -3.6
101,701 + -1.2
102,070 + -2.7
102,071 - +0.8
102,112 + -3.5
102,167 + -2.6
102,534 - RR42_RS21285 0.30 -1.9
102,534 - RR42_RS21285 0.30 -0.5
102,565 + RR42_RS21285 0.32 -0.9
102,565 + RR42_RS21285 0.32 -0.9
102,565 + RR42_RS21285 0.32 +0.3
102,565 + RR42_RS21285 0.32 -3.8
102,637 + RR42_RS21285 0.37 -5.2
102,733 + RR42_RS21285 0.43 +0.1
102,734 - RR42_RS21285 0.44 -2.7
103,013 - RR42_RS21285 0.63 -2.2
103,028 + RR42_RS21285 0.64 -2.0
103,123 + RR42_RS21285 0.71 -3.6
103,124 - RR42_RS21285 0.71 -2.9
103,171 + RR42_RS21285 0.74 -3.6
103,574 + -1.7
103,574 + -3.0
103,575 - -2.9
103,575 - -2.5
103,616 - -1.9
103,695 - RR42_RS21290 0.17 -0.3
103,695 - RR42_RS21290 0.17 -2.3
103,779 + RR42_RS21290 0.29 +0.1
103,889 - RR42_RS21290 0.44 -2.0
104,175 + RR42_RS21290 0.85 -1.8
104,175 + RR42_RS21290 0.85 -1.4
104,175 + RR42_RS21290 0.85 -3.5
104,176 - RR42_RS21290 0.85 -3.3
104,240 + -0.5

Or see this region's nucleotide sequence