Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20355 and RR42_RS20360 are separated by 88 nucleotides RR42_RS20360 and RR42_RS20365 are separated by 306 nucleotides RR42_RS20365 and RR42_RS20370 are separated by 156 nucleotides RR42_RS20370 and RR42_RS20375 are separated by 144 nucleotides
RR42_RS20355: RR42_RS20355 - alpha-2-macroglobulin, at 4,403,820 to 4,409,840
_RS20355
RR42_RS20360: RR42_RS20360 - AsnC family transcriptional regulator, at 4,409,929 to 4,410,408
_RS20360
RR42_RS20365: RR42_RS20365 - phenylalanine 4-monooxygenase (EC 1.14.16.1) <small>(from data)</small>, at 4,410,715 to 4,411,647
_RS20365
RR42_RS20370: RR42_RS20370 - pterin-4-alpha-carbinolamine dehydratase, at 4,411,804 to 4,412,121
_RS20370
RR42_RS20375: RR42_RS20375 - transcriptional regulator, at 4,412,266 to 4,412,970
_RS20375
Position (kb) 4410
4411
4412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4410.083 kb on + strand, within RR42_RS20360 at 4410.107 kb on + strand, within RR42_RS20360 at 4410.512 kb on + strand at 4410.513 kb on - strand at 4410.521 kb on + strand at 4410.592 kb on + strand at 4410.720 kb on + strand at 4410.860 kb on - strand, within RR42_RS20365 at 4410.862 kb on - strand, within RR42_RS20365 at 4410.862 kb on - strand, within RR42_RS20365 at 4410.895 kb on + strand, within RR42_RS20365 at 4410.896 kb on - strand, within RR42_RS20365 at 4410.896 kb on - strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.294 kb on + strand, within RR42_RS20365 at 4411.295 kb on - strand, within RR42_RS20365 at 4411.342 kb on + strand, within RR42_RS20365 at 4411.381 kb on + strand, within RR42_RS20365 at 4411.382 kb on - strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.475 kb on - strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.538 kb on - strand, within RR42_RS20365 at 4411.829 kb on + strand at 4411.915 kb on - strand, within RR42_RS20370 at 4412.008 kb on + strand, within RR42_RS20370 at 4412.159 kb on - strand at 4412.194 kb on + strand at 4412.271 kb on + strand at 4412.271 kb on + strand at 4412.557 kb on + strand, within RR42_RS20375 at 4412.558 kb on - strand, within RR42_RS20375 at 4412.606 kb on + strand, within RR42_RS20375 at 4412.607 kb on - strand, within RR42_RS20375
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 4,410,083 + RR42_RS20360 0.32 +0.8 4,410,107 + RR42_RS20360 0.37 -0.0 4,410,512 + +0.1 4,410,513 - -0.2 4,410,521 + +2.2 4,410,592 + +0.2 4,410,720 + -0.1 4,410,860 - RR42_RS20365 0.16 +0.6 4,410,862 - RR42_RS20365 0.16 +0.3 4,410,862 - RR42_RS20365 0.16 +0.7 4,410,895 + RR42_RS20365 0.19 +1.0 4,410,896 - RR42_RS20365 0.19 +0.9 4,410,896 - RR42_RS20365 0.19 -0.2 4,411,216 + RR42_RS20365 0.54 +0.6 4,411,216 + RR42_RS20365 0.54 -0.9 4,411,216 + RR42_RS20365 0.54 +0.5 4,411,216 + RR42_RS20365 0.54 -0.8 4,411,217 - RR42_RS20365 0.54 -1.9 4,411,217 - RR42_RS20365 0.54 +1.2 4,411,217 - RR42_RS20365 0.54 +0.1 4,411,217 - RR42_RS20365 0.54 +0.1 4,411,217 - RR42_RS20365 0.54 +0.2 4,411,294 + RR42_RS20365 0.62 +0.4 4,411,295 - RR42_RS20365 0.62 +0.4 4,411,342 + RR42_RS20365 0.67 -1.0 4,411,381 + RR42_RS20365 0.71 +1.2 4,411,382 - RR42_RS20365 0.71 +0.1 4,411,474 + RR42_RS20365 0.81 +0.9 4,411,474 + RR42_RS20365 0.81 +0.6 4,411,474 + RR42_RS20365 0.81 -0.4 4,411,474 + RR42_RS20365 0.81 +0.8 4,411,475 - RR42_RS20365 0.81 -0.5 4,411,537 + RR42_RS20365 0.88 +1.0 4,411,537 + RR42_RS20365 0.88 +1.7 4,411,537 + RR42_RS20365 0.88 +0.2 4,411,538 - RR42_RS20365 0.88 +0.9 4,411,829 + -0.1 4,411,915 - RR42_RS20370 0.35 -0.6 4,412,008 + RR42_RS20370 0.64 +0.1 4,412,159 - +0.6 4,412,194 + +0.2 4,412,271 + -0.2 4,412,271 + -0.8 4,412,557 + RR42_RS20375 0.41 -0.8 4,412,558 - RR42_RS20375 0.41 +0.2 4,412,606 + RR42_RS20375 0.48 +0.2 4,412,607 - RR42_RS20375 0.48 +0.7
Or see this region's nucleotide sequence