Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19865 and RR42_RS19870 are separated by 64 nucleotides RR42_RS19870 and RR42_RS19875 are separated by 101 nucleotides
RR42_RS19865: RR42_RS19865 - hydroxypyruvate reductase, at 4,288,624 to 4,289,937
_RS19865
RR42_RS19870: RR42_RS19870 - pyruvate kinase, at 4,290,002 to 4,291,480
_RS19870
RR42_RS19875: RR42_RS19875 - metalloprotease, at 4,291,582 to 4,292,475
_RS19875
Position (kb) 4290
4291
4292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4289.108 kb on + strand, within RR42_RS19865 at 4289.109 kb on - strand, within RR42_RS19865 at 4289.109 kb on - strand, within RR42_RS19865 at 4289.320 kb on + strand, within RR42_RS19865 at 4289.320 kb on + strand, within RR42_RS19865 at 4289.321 kb on - strand, within RR42_RS19865 at 4289.935 kb on + strand at 4290.899 kb on + strand, within RR42_RS19870 at 4290.900 kb on - strand, within RR42_RS19870 at 4290.900 kb on - strand, within RR42_RS19870 at 4290.900 kb on - strand, within RR42_RS19870 at 4291.128 kb on - strand, within RR42_RS19870 at 4291.128 kb on - strand, within RR42_RS19870 at 4291.323 kb on - strand, within RR42_RS19870 at 4291.517 kb on + strand at 4291.517 kb on + strand at 4291.517 kb on + strand at 4291.517 kb on + strand at 4291.518 kb on - strand at 4291.518 kb on - strand at 4291.518 kb on - strand at 4291.518 kb on - strand at 4291.520 kb on - strand at 4291.567 kb on + strand at 4291.567 kb on + strand at 4291.568 kb on - strand at 4291.616 kb on + strand at 4291.616 kb on + strand at 4291.616 kb on + strand at 4291.616 kb on + strand at 4291.617 kb on - strand at 4291.717 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.888 kb on - strand, within RR42_RS19875 at 4291.915 kb on + strand, within RR42_RS19875 at 4291.996 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.021 kb on - strand, within RR42_RS19875 at 4292.021 kb on - strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.356 kb on + strand, within RR42_RS19875 at 4292.356 kb on + strand, within RR42_RS19875 at 4292.357 kb on - strand, within RR42_RS19875
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 4,289,108 + RR42_RS19865 0.37 +0.8 4,289,109 - RR42_RS19865 0.37 -1.1 4,289,109 - RR42_RS19865 0.37 -0.6 4,289,320 + RR42_RS19865 0.53 +0.5 4,289,320 + RR42_RS19865 0.53 -0.2 4,289,321 - RR42_RS19865 0.53 +0.4 4,289,935 + +0.5 4,290,899 + RR42_RS19870 0.61 +0.5 4,290,900 - RR42_RS19870 0.61 -1.6 4,290,900 - RR42_RS19870 0.61 -1.4 4,290,900 - RR42_RS19870 0.61 -0.8 4,291,128 - RR42_RS19870 0.76 -0.4 4,291,128 - RR42_RS19870 0.76 -0.0 4,291,323 - RR42_RS19870 0.89 +2.8 4,291,517 + -0.0 4,291,517 + -0.5 4,291,517 + -0.7 4,291,517 + +0.7 4,291,518 - +1.0 4,291,518 - +0.4 4,291,518 - -0.1 4,291,518 - +0.8 4,291,520 - -1.6 4,291,567 + +1.2 4,291,567 + -0.5 4,291,568 - +0.7 4,291,616 + +0.4 4,291,616 + -0.6 4,291,616 + -0.7 4,291,616 + +0.2 4,291,617 - -1.1 4,291,717 + RR42_RS19875 0.15 -2.1 4,291,887 + RR42_RS19875 0.34 -0.6 4,291,887 + RR42_RS19875 0.34 +1.6 4,291,887 + RR42_RS19875 0.34 -0.4 4,291,888 - RR42_RS19875 0.34 +0.1 4,291,915 + RR42_RS19875 0.37 +1.0 4,291,996 + RR42_RS19875 0.46 +1.2 4,292,020 + RR42_RS19875 0.49 +0.3 4,292,020 + RR42_RS19875 0.49 +1.8 4,292,020 + RR42_RS19875 0.49 -0.6 4,292,021 - RR42_RS19875 0.49 -0.1 4,292,021 - RR42_RS19875 0.49 +0.1 4,292,089 + RR42_RS19875 0.57 -1.3 4,292,089 + RR42_RS19875 0.57 -0.8 4,292,089 + RR42_RS19875 0.57 -3.1 4,292,089 + RR42_RS19875 0.57 -0.2 4,292,089 + RR42_RS19875 0.57 +0.2 4,292,090 - RR42_RS19875 0.57 -0.7 4,292,090 - RR42_RS19875 0.57 -0.3 4,292,090 - RR42_RS19875 0.57 +0.9 4,292,356 + RR42_RS19875 0.87 +0.6 4,292,356 + RR42_RS19875 0.87 +1.2 4,292,357 - RR42_RS19875 0.87 -0.2
Or see this region's nucleotide sequence