Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09050 and RR42_RS09055 overlap by 14 nucleotides RR42_RS09055 and RR42_RS09060 are separated by 12 nucleotides RR42_RS09060 and RR42_RS09065 are separated by 238 nucleotides
RR42_RS09050: RR42_RS09050 - arylesterase, at 1,903,222 to 1,903,917
_RS09050
RR42_RS09055: RR42_RS09055 - ABC transporter, at 1,903,904 to 1,904,602
_RS09055
RR42_RS09060: RR42_RS09060 - glucose-6-phosphate isomerase, at 1,904,615 to 1,906,249
_RS09060
RR42_RS09065: RR42_RS09065 - multidrug DMT transporter permease, at 1,906,488 to 1,907,399
_RS09065
Position (kb) 1904
1905
1906
1907 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1903.683 kb on + strand, within RR42_RS09050 at 1903.683 kb on + strand, within RR42_RS09050 at 1903.684 kb on - strand, within RR42_RS09050 at 1903.684 kb on - strand, within RR42_RS09050 at 1904.325 kb on - strand, within RR42_RS09055 at 1904.603 kb on + strand at 1904.704 kb on + strand at 1904.705 kb on - strand at 1904.811 kb on + strand, within RR42_RS09060 at 1905.094 kb on - strand, within RR42_RS09060 at 1906.101 kb on + strand at 1906.101 kb on + strand at 1906.102 kb on - strand at 1906.284 kb on - strand at 1906.313 kb on + strand at 1906.374 kb on + strand at 1906.374 kb on + strand at 1906.374 kb on + strand at 1906.376 kb on + strand at 1906.377 kb on - strand at 1906.621 kb on + strand, within RR42_RS09065 at 1906.687 kb on + strand, within RR42_RS09065 at 1906.712 kb on - strand, within RR42_RS09065
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 1,903,683 + RR42_RS09050 0.66 +0.3 1,903,683 + RR42_RS09050 0.66 -0.9 1,903,684 - RR42_RS09050 0.66 -1.2 1,903,684 - RR42_RS09050 0.66 +0.4 1,904,325 - RR42_RS09055 0.60 +0.7 1,904,603 + -0.6 1,904,704 + -1.5 1,904,705 - -1.6 1,904,811 + RR42_RS09060 0.12 -1.5 1,905,094 - RR42_RS09060 0.29 -1.2 1,906,101 + -0.3 1,906,101 + -1.2 1,906,102 - -1.9 1,906,284 - +0.5 1,906,313 + -1.3 1,906,374 + -2.8 1,906,374 + -1.5 1,906,374 + -2.0 1,906,376 + -1.4 1,906,377 - -2.1 1,906,621 + RR42_RS09065 0.15 -0.8 1,906,687 + RR42_RS09065 0.22 +0.3 1,906,712 - RR42_RS09065 0.25 +0.0
Or see this region's nucleotide sequence