Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04465 and RR42_RS04470 are separated by 138 nucleotides RR42_RS04470 and RR42_RS04475 are separated by 93 nucleotides
RR42_RS04465: RR42_RS04465 - aspartate aminotransferase, at 998,245 to 999,360
_RS04465
RR42_RS04470: RR42_RS04470 - prephenate dehydrogenase, at 999,499 to 1,000,407
_RS04470
RR42_RS04475: RR42_RS04475 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,000,501 to 1,001,811
_RS04475
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 998.597 kb on - strand, within RR42_RS04465 at 998.620 kb on + strand, within RR42_RS04465 at 998.737 kb on - strand, within RR42_RS04465 at 998.748 kb on + strand, within RR42_RS04465 at 998.748 kb on + strand, within RR42_RS04465 at 998.749 kb on - strand, within RR42_RS04465 at 998.749 kb on - strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.851 kb on + strand, within RR42_RS04465 at 998.851 kb on + strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.873 kb on - strand, within RR42_RS04465 at 998.899 kb on + strand, within RR42_RS04465 at 998.900 kb on - strand, within RR42_RS04465 at 998.915 kb on + strand, within RR42_RS04465 at 998.938 kb on + strand, within RR42_RS04465 at 998.939 kb on - strand, within RR42_RS04465 at 998.966 kb on - strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.254 kb on + strand at 999.295 kb on - strand at 999.358 kb on + strand at 999.359 kb on - strand at 999.454 kb on + strand at 999.454 kb on + strand at 999.454 kb on + strand at 999.454 kb on + strand at 999.454 kb on + strand at 999.455 kb on - strand at 999.455 kb on - strand at 999.455 kb on - strand at 999.492 kb on + strand at 999.787 kb on - strand at 999.934 kb on + strand, within RR42_RS04470 at 999.934 kb on + strand, within RR42_RS04470 at 999.934 kb on + strand, within RR42_RS04470 at 999.934 kb on + strand, within RR42_RS04470 at 999.935 kb on - strand, within RR42_RS04470 at 999.935 kb on - strand, within RR42_RS04470 at 999.935 kb on - strand, within RR42_RS04470 at 1000.267 kb on + strand, within RR42_RS04470 at 1000.267 kb on + strand, within RR42_RS04470 at 1000.268 kb on - strand, within RR42_RS04470 at 1000.332 kb on + strand at 1000.332 kb on + strand at 1000.333 kb on - strand at 1000.488 kb on + strand at 1000.489 kb on - strand at 1000.489 kb on - strand at 1000.828 kb on + strand, within RR42_RS04475 at 1000.829 kb on - strand, within RR42_RS04475 at 1000.851 kb on + strand, within RR42_RS04475 at 1000.852 kb on - strand, within RR42_RS04475 at 1000.852 kb on - strand, within RR42_RS04475 at 1000.852 kb on - strand, within RR42_RS04475 at 1000.852 kb on - strand, within RR42_RS04475 at 1000.898 kb on + strand, within RR42_RS04475 at 1000.898 kb on + strand, within RR42_RS04475 at 1000.915 kb on + strand, within RR42_RS04475 at 1001.104 kb on + strand, within RR42_RS04475 at 1001.248 kb on + strand, within RR42_RS04475 at 1001.249 kb on - strand, within RR42_RS04475 at 1001.347 kb on - strand, within RR42_RS04475
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 998,597 - RR42_RS04465 0.32 -0.3 998,620 + RR42_RS04465 0.34 -0.5 998,737 - RR42_RS04465 0.44 +0.3 998,748 + RR42_RS04465 0.45 -0.0 998,748 + RR42_RS04465 0.45 +0.3 998,749 - RR42_RS04465 0.45 +0.4 998,749 - RR42_RS04465 0.45 -0.5 998,842 + RR42_RS04465 0.53 -0.4 998,842 + RR42_RS04465 0.53 -0.1 998,842 + RR42_RS04465 0.53 +0.9 998,843 - RR42_RS04465 0.54 -1.0 998,843 - RR42_RS04465 0.54 +0.3 998,843 - RR42_RS04465 0.54 -0.5 998,851 + RR42_RS04465 0.54 +0.4 998,851 + RR42_RS04465 0.54 -1.1 998,852 - RR42_RS04465 0.54 +0.3 998,852 - RR42_RS04465 0.54 -1.9 998,852 - RR42_RS04465 0.54 +1.3 998,852 - RR42_RS04465 0.54 +0.4 998,873 - RR42_RS04465 0.56 +0.1 998,899 + RR42_RS04465 0.59 +0.7 998,900 - RR42_RS04465 0.59 +0.6 998,915 + RR42_RS04465 0.60 -0.0 998,938 + RR42_RS04465 0.62 -2.1 998,939 - RR42_RS04465 0.62 -0.1 998,966 - RR42_RS04465 0.65 -1.2 999,154 + RR42_RS04465 0.81 -0.1 999,154 + RR42_RS04465 0.81 -0.0 999,154 + RR42_RS04465 0.81 -0.0 999,154 + RR42_RS04465 0.81 -0.1 999,154 + RR42_RS04465 0.81 +0.0 999,155 - RR42_RS04465 0.82 -0.7 999,155 - RR42_RS04465 0.82 +0.1 999,155 - RR42_RS04465 0.82 -0.5 999,155 - RR42_RS04465 0.82 +1.2 999,155 - RR42_RS04465 0.82 +0.3 999,155 - RR42_RS04465 0.82 +0.9 999,155 - RR42_RS04465 0.82 -0.2 999,254 + +0.6 999,295 - +0.6 999,358 + -0.8 999,359 - +1.1 999,454 + +1.1 999,454 + +0.5 999,454 + +0.5 999,454 + -0.3 999,454 + +0.3 999,455 - +0.4 999,455 - +0.5 999,455 - -1.4 999,492 + -0.3 999,787 - +0.9 999,934 + RR42_RS04470 0.48 -3.9 999,934 + RR42_RS04470 0.48 -2.9 999,934 + RR42_RS04470 0.48 -5.2 999,934 + RR42_RS04470 0.48 -2.0 999,935 - RR42_RS04470 0.48 -2.1 999,935 - RR42_RS04470 0.48 -2.1 999,935 - RR42_RS04470 0.48 -5.8 1,000,267 + RR42_RS04470 0.84 -2.5 1,000,267 + RR42_RS04470 0.84 -2.2 1,000,268 - RR42_RS04470 0.85 -3.0 1,000,332 + -1.8 1,000,332 + -2.5 1,000,333 - -3.6 1,000,488 + -0.2 1,000,489 - -3.9 1,000,489 - -3.1 1,000,828 + RR42_RS04475 0.25 -4.5 1,000,829 - RR42_RS04475 0.25 -3.1 1,000,851 + RR42_RS04475 0.27 -4.7 1,000,852 - RR42_RS04475 0.27 -2.3 1,000,852 - RR42_RS04475 0.27 -6.6 1,000,852 - RR42_RS04475 0.27 -1.7 1,000,852 - RR42_RS04475 0.27 -2.6 1,000,898 + RR42_RS04475 0.30 -3.9 1,000,898 + RR42_RS04475 0.30 -4.8 1,000,915 + RR42_RS04475 0.32 -4.9 1,001,104 + RR42_RS04475 0.46 -6.3 1,001,248 + RR42_RS04475 0.57 -2.1 1,001,249 - RR42_RS04475 0.57 -3.7 1,001,347 - RR42_RS04475 0.65 -1.1
Or see this region's nucleotide sequence