Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04260 and RR42_RS04265 are separated by 85 nucleotides RR42_RS04265 and RR42_RS04270 are separated by 476 nucleotides
RR42_RS04260: RR42_RS04260 - chemotaxis protein, at 941,179 to 943,347
_RS04260
RR42_RS04265: RR42_RS04265 - chemotaxis protein CheY, at 943,433 to 949,480
_RS04265
RR42_RS04270: RR42_RS04270 - MFS transporter, at 949,957 to 951,261
_RS04270
Position (kb) 943
944
945
946
947
948
949
950 Strain fitness (log2 ratio) -1
0
1
2 at 942.478 kb on + strand, within RR42_RS04260 at 942.478 kb on + strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 943.200 kb on + strand at 943.218 kb on + strand at 943.219 kb on - strand at 943.317 kb on + strand at 943.756 kb on - strand at 943.782 kb on - strand at 943.889 kb on + strand at 943.890 kb on - strand at 944.153 kb on + strand, within RR42_RS04265 at 944.153 kb on + strand, within RR42_RS04265 at 944.153 kb on + strand, within RR42_RS04265 at 944.153 kb on + strand, within RR42_RS04265 at 944.185 kb on - strand, within RR42_RS04265 at 944.397 kb on - strand, within RR42_RS04265 at 944.547 kb on - strand, within RR42_RS04265 at 944.549 kb on + strand, within RR42_RS04265 at 944.549 kb on + strand, within RR42_RS04265 at 944.550 kb on - strand, within RR42_RS04265 at 944.550 kb on - strand, within RR42_RS04265 at 944.648 kb on - strand, within RR42_RS04265 at 944.876 kb on + strand, within RR42_RS04265 at 944.876 kb on + strand, within RR42_RS04265 at 944.877 kb on - strand, within RR42_RS04265 at 944.877 kb on - strand, within RR42_RS04265 at 944.877 kb on - strand, within RR42_RS04265 at 945.029 kb on + strand, within RR42_RS04265 at 945.030 kb on - strand, within RR42_RS04265 at 945.370 kb on + strand, within RR42_RS04265 at 945.370 kb on + strand, within RR42_RS04265 at 945.371 kb on - strand, within RR42_RS04265 at 945.371 kb on - strand, within RR42_RS04265 at 945.371 kb on - strand, within RR42_RS04265 at 945.371 kb on - strand, within RR42_RS04265 at 945.598 kb on + strand, within RR42_RS04265 at 945.599 kb on - strand, within RR42_RS04265 at 945.760 kb on + strand, within RR42_RS04265 at 945.875 kb on - strand, within RR42_RS04265 at 945.875 kb on - strand, within RR42_RS04265 at 946.403 kb on + strand, within RR42_RS04265 at 946.404 kb on - strand, within RR42_RS04265 at 946.413 kb on - strand, within RR42_RS04265 at 946.937 kb on - strand, within RR42_RS04265 at 947.246 kb on + strand, within RR42_RS04265 at 947.275 kb on + strand, within RR42_RS04265 at 947.276 kb on - strand, within RR42_RS04265 at 947.276 kb on - strand, within RR42_RS04265 at 947.439 kb on + strand, within RR42_RS04265 at 947.439 kb on + strand, within RR42_RS04265 at 947.440 kb on - strand, within RR42_RS04265 at 947.581 kb on + strand, within RR42_RS04265 at 947.658 kb on - strand, within RR42_RS04265 at 947.993 kb on + strand, within RR42_RS04265 at 948.036 kb on + strand, within RR42_RS04265 at 948.133 kb on - strand, within RR42_RS04265 at 948.520 kb on + strand, within RR42_RS04265 at 948.521 kb on - strand, within RR42_RS04265 at 948.624 kb on - strand, within RR42_RS04265 at 948.722 kb on + strand, within RR42_RS04265 at 948.722 kb on + strand, within RR42_RS04265 at 948.723 kb on - strand, within RR42_RS04265 at 948.890 kb on + strand at 948.891 kb on - strand at 948.891 kb on - strand at 949.228 kb on + strand at 949.228 kb on + strand at 949.229 kb on - strand at 949.229 kb on - strand at 949.229 kb on - strand at 949.282 kb on + strand at 949.282 kb on + strand at 949.282 kb on + strand at 949.359 kb on - strand at 949.373 kb on + strand at 949.373 kb on + strand at 949.373 kb on + strand at 949.373 kb on + strand at 949.773 kb on + strand at 949.773 kb on + strand at 949.773 kb on + strand at 949.959 kb on - strand at 950.031 kb on - strand at 950.243 kb on + strand, within RR42_RS04270 at 950.244 kb on + strand, within RR42_RS04270 at 950.244 kb on + strand, within RR42_RS04270 at 950.245 kb on - strand, within RR42_RS04270 at 950.343 kb on - strand, within RR42_RS04270 at 950.379 kb on - strand, within RR42_RS04270 at 950.465 kb on + strand, within RR42_RS04270 at 950.466 kb on - strand, within RR42_RS04270
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 942,478 + RR42_RS04260 0.60 -0.7 942,478 + RR42_RS04260 0.60 -0.1 942,479 - RR42_RS04260 0.60 -0.2 942,479 - RR42_RS04260 0.60 -1.4 942,479 - RR42_RS04260 0.60 -0.1 942,479 - RR42_RS04260 0.60 +0.0 943,200 + +0.3 943,218 + -0.3 943,219 - -0.7 943,317 + +0.1 943,756 - -1.0 943,782 - -1.4 943,889 + -0.3 943,890 - -0.8 944,153 + RR42_RS04265 0.12 -1.2 944,153 + RR42_RS04265 0.12 +1.3 944,153 + RR42_RS04265 0.12 -0.5 944,153 + RR42_RS04265 0.12 -1.3 944,185 - RR42_RS04265 0.12 -0.2 944,397 - RR42_RS04265 0.16 -1.3 944,547 - RR42_RS04265 0.18 -0.3 944,549 + RR42_RS04265 0.18 -0.3 944,549 + RR42_RS04265 0.18 +0.4 944,550 - RR42_RS04265 0.18 +0.1 944,550 - RR42_RS04265 0.18 +1.2 944,648 - RR42_RS04265 0.20 -1.2 944,876 + RR42_RS04265 0.24 -0.5 944,876 + RR42_RS04265 0.24 -0.2 944,877 - RR42_RS04265 0.24 +0.9 944,877 - RR42_RS04265 0.24 -0.1 944,877 - RR42_RS04265 0.24 -1.0 945,029 + RR42_RS04265 0.26 +0.4 945,030 - RR42_RS04265 0.26 -1.1 945,370 + RR42_RS04265 0.32 +0.8 945,370 + RR42_RS04265 0.32 -0.6 945,371 - RR42_RS04265 0.32 +0.6 945,371 - RR42_RS04265 0.32 +0.1 945,371 - RR42_RS04265 0.32 +0.4 945,371 - RR42_RS04265 0.32 +0.5 945,598 + RR42_RS04265 0.36 -0.1 945,599 - RR42_RS04265 0.36 -0.3 945,760 + RR42_RS04265 0.38 +0.9 945,875 - RR42_RS04265 0.40 -0.1 945,875 - RR42_RS04265 0.40 -0.5 946,403 + RR42_RS04265 0.49 -0.1 946,404 - RR42_RS04265 0.49 +1.4 946,413 - RR42_RS04265 0.49 -1.1 946,937 - RR42_RS04265 0.58 +0.2 947,246 + RR42_RS04265 0.63 -0.8 947,275 + RR42_RS04265 0.64 -0.0 947,276 - RR42_RS04265 0.64 -0.1 947,276 - RR42_RS04265 0.64 -0.1 947,439 + RR42_RS04265 0.66 -0.3 947,439 + RR42_RS04265 0.66 -0.8 947,440 - RR42_RS04265 0.66 -0.0 947,581 + RR42_RS04265 0.69 -0.3 947,658 - RR42_RS04265 0.70 +0.1 947,993 + RR42_RS04265 0.75 +0.2 948,036 + RR42_RS04265 0.76 +0.6 948,133 - RR42_RS04265 0.78 +1.2 948,520 + RR42_RS04265 0.84 -0.5 948,521 - RR42_RS04265 0.84 +0.1 948,624 - RR42_RS04265 0.86 -1.4 948,722 + RR42_RS04265 0.87 -0.9 948,722 + RR42_RS04265 0.87 -0.9 948,723 - RR42_RS04265 0.87 +0.6 948,890 + -0.4 948,891 - +0.2 948,891 - -0.1 949,228 + -0.8 949,228 + +0.2 949,229 - +1.9 949,229 - +0.4 949,229 - -0.3 949,282 + -0.1 949,282 + -1.1 949,282 + +0.0 949,359 - +0.5 949,373 + -0.8 949,373 + +0.4 949,373 + +0.2 949,373 + +0.0 949,773 + -0.0 949,773 + +0.6 949,773 + -0.2 949,959 - +0.2 950,031 - -0.7 950,243 + RR42_RS04270 0.22 -1.1 950,244 + RR42_RS04270 0.22 -1.4 950,244 + RR42_RS04270 0.22 -0.8 950,245 - RR42_RS04270 0.22 +0.1 950,343 - RR42_RS04270 0.30 -1.4 950,379 - RR42_RS04270 0.32 +1.0 950,465 + RR42_RS04270 0.39 -0.1 950,466 - RR42_RS04270 0.39 +2.2
Or see this region's nucleotide sequence