Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02230 and RR42_RS02235 overlap by 4 nucleotides RR42_RS02235 and RR42_RS02240 overlap by 1 nucleotides
RR42_RS02230: RR42_RS02230 - sulfolactate dehydrogenase, at 493,832 to 494,836
_RS02230
RR42_RS02235: RR42_RS02235 - 3-phosphoglycerate dehydrogenase, at 494,833 to 495,768
_RS02235
RR42_RS02240: RR42_RS02240 - D-galactarate dehydratase, at 495,768 to 496,943
_RS02240
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 493.845 kb on - strand at 493.992 kb on + strand, within RR42_RS02230 at 493.993 kb on - strand, within RR42_RS02230 at 493.993 kb on - strand, within RR42_RS02230 at 494.048 kb on - strand, within RR42_RS02230 at 494.627 kb on + strand, within RR42_RS02230 at 494.679 kb on + strand, within RR42_RS02230 at 494.679 kb on + strand, within RR42_RS02230 at 494.680 kb on - strand, within RR42_RS02230 at 494.920 kb on - strand at 494.959 kb on - strand, within RR42_RS02235 at 494.971 kb on + strand, within RR42_RS02235 at 495.416 kb on + strand, within RR42_RS02235 at 495.455 kb on + strand, within RR42_RS02235 at 495.535 kb on - strand, within RR42_RS02235 at 495.932 kb on + strand, within RR42_RS02240 at 495.933 kb on - strand, within RR42_RS02240 at 495.933 kb on - strand, within RR42_RS02240 at 495.933 kb on - strand, within RR42_RS02240 at 496.042 kb on + strand, within RR42_RS02240 at 496.179 kb on - strand, within RR42_RS02240 at 496.352 kb on + strand, within RR42_RS02240 at 496.353 kb on - strand, within RR42_RS02240 at 496.467 kb on - strand, within RR42_RS02240 at 496.541 kb on - strand, within RR42_RS02240
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 493,845 - -0.1 493,992 + RR42_RS02230 0.16 -0.5 493,993 - RR42_RS02230 0.16 -0.6 493,993 - RR42_RS02230 0.16 +0.6 494,048 - RR42_RS02230 0.21 +0.8 494,627 + RR42_RS02230 0.79 -0.6 494,679 + RR42_RS02230 0.84 -0.3 494,679 + RR42_RS02230 0.84 -0.2 494,680 - RR42_RS02230 0.84 +0.1 494,920 - -0.4 494,959 - RR42_RS02235 0.13 +1.1 494,971 + RR42_RS02235 0.15 -0.7 495,416 + RR42_RS02235 0.62 -0.5 495,455 + RR42_RS02235 0.66 -2.1 495,535 - RR42_RS02235 0.75 -0.5 495,932 + RR42_RS02240 0.14 -0.5 495,933 - RR42_RS02240 0.14 +0.0 495,933 - RR42_RS02240 0.14 +0.3 495,933 - RR42_RS02240 0.14 +0.3 496,042 + RR42_RS02240 0.23 +0.6 496,179 - RR42_RS02240 0.35 -0.3 496,352 + RR42_RS02240 0.50 +0.3 496,353 - RR42_RS02240 0.50 +0.2 496,467 - RR42_RS02240 0.59 +0.6 496,541 - RR42_RS02240 0.66 +0.1
Or see this region's nucleotide sequence