Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01075 and RR42_RS01080 are separated by 259 nucleotides RR42_RS01080 and RR42_RS01085 are separated by 23 nucleotides RR42_RS01085 and RR42_RS01090 overlap by 4 nucleotides
RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073
_RS01075
RR42_RS01080: RR42_RS01080 - hypothetical protein, at 253,333 to 253,629
_RS01080
RR42_RS01085: RR42_RS01085 - chemotaxis protein CheY, at 253,653 to 254,276
_RS01085
RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676
_RS01090
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.393 kb on - strand at 252.393 kb on - strand at 252.399 kb on + strand at 252.399 kb on + strand at 252.400 kb on - strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.594 kb on + strand, within RR42_RS01075 at 252.595 kb on - strand, within RR42_RS01075 at 252.627 kb on + strand, within RR42_RS01075 at 252.627 kb on + strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.795 kb on + strand, within RR42_RS01075 at 252.796 kb on - strand, within RR42_RS01075 at 252.853 kb on + strand, within RR42_RS01075 at 252.853 kb on + strand, within RR42_RS01075 at 252.854 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 253.034 kb on + strand at 253.034 kb on + strand at 253.034 kb on + strand at 253.035 kb on - strand at 253.035 kb on - strand at 253.062 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.072 kb on - strand at 253.072 kb on - strand at 253.158 kb on + strand at 253.159 kb on - strand at 253.172 kb on - strand at 253.205 kb on + strand at 253.205 kb on + strand at 253.206 kb on - strand at 253.206 kb on - strand at 253.206 kb on - strand at 253.216 kb on - strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.347 kb on - strand at 253.347 kb on - strand at 253.347 kb on - strand at 253.425 kb on - strand, within RR42_RS01080 at 253.609 kb on + strand at 253.609 kb on + strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.637 kb on + strand at 253.638 kb on - strand at 253.654 kb on + strand at 253.655 kb on - strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.734 kb on - strand, within RR42_RS01085 at 253.894 kb on + strand, within RR42_RS01085 at 253.895 kb on - strand, within RR42_RS01085 at 253.895 kb on - strand, within RR42_RS01085 at 253.945 kb on + strand, within RR42_RS01085 at 253.945 kb on + strand, within RR42_RS01085 at 254.077 kb on + strand, within RR42_RS01085 at 254.077 kb on + strand, within RR42_RS01085 at 254.078 kb on - strand, within RR42_RS01085 at 254.433 kb on + strand, within RR42_RS01090 at 254.434 kb on - strand, within RR42_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 252,393 - +0.4 252,393 - +0.1 252,399 + +0.1 252,399 + +0.7 252,400 - -0.4 252,403 + +0.2 252,403 + -0.7 252,403 + -1.4 252,403 + -0.1 252,403 + -0.5 252,403 + -0.4 252,403 + -0.1 252,403 + +0.3 252,403 + -0.2 252,404 - -0.8 252,404 - -0.2 252,404 - -0.1 252,404 - +0.4 252,404 - -1.1 252,404 - +0.5 252,404 - +1.4 252,404 - -0.0 252,594 + RR42_RS01075 0.18 -1.3 252,595 - RR42_RS01075 0.18 -0.2 252,627 + RR42_RS01075 0.23 -0.6 252,627 + RR42_RS01075 0.23 -2.1 252,628 - RR42_RS01075 0.23 -0.2 252,628 - RR42_RS01075 0.23 -0.3 252,628 - RR42_RS01075 0.23 -0.3 252,628 - RR42_RS01075 0.23 +0.3 252,795 + RR42_RS01075 0.52 +2.2 252,796 - RR42_RS01075 0.52 +0.2 252,853 + RR42_RS01075 0.62 +0.7 252,853 + RR42_RS01075 0.62 +0.4 252,854 - RR42_RS01075 0.62 -0.8 252,985 - RR42_RS01075 0.85 -0.2 252,985 - RR42_RS01075 0.85 +0.7 252,985 - RR42_RS01075 0.85 +0.5 253,034 + -0.3 253,034 + -0.4 253,034 + +0.9 253,035 - +0.2 253,035 - +0.6 253,062 + +0.1 253,071 + -0.4 253,071 + -1.3 253,071 + +0.2 253,071 + +0.3 253,071 + +0.1 253,072 - +0.0 253,072 - -0.0 253,158 + -1.1 253,159 - -0.1 253,172 - -0.3 253,205 + +1.8 253,205 + +1.7 253,206 - -1.0 253,206 - +0.9 253,206 - +0.3 253,216 - -0.4 253,346 + +0.3 253,346 + +0.4 253,346 + -0.1 253,346 + -0.6 253,347 - -1.7 253,347 - -0.8 253,347 - -0.4 253,425 - RR42_RS01080 0.31 -1.4 253,609 + +0.7 253,609 + -0.7 253,610 - -1.3 253,610 - +0.3 253,610 - +0.4 253,610 - -1.1 253,610 - +0.2 253,637 + -0.7 253,638 - +1.0 253,654 + +1.2 253,655 - +0.4 253,706 + -1.3 253,706 + +0.1 253,706 + -0.5 253,706 + -1.4 253,707 - -0.4 253,707 - -0.2 253,707 - -1.6 253,707 - +0.4 253,707 - -0.4 253,707 - +0.6 253,733 + RR42_RS01085 0.13 +0.3 253,733 + RR42_RS01085 0.13 -0.7 253,733 + RR42_RS01085 0.13 +0.6 253,733 + RR42_RS01085 0.13 -1.2 253,734 - RR42_RS01085 0.13 -0.3 253,894 + RR42_RS01085 0.39 -0.1 253,895 - RR42_RS01085 0.39 +0.6 253,895 - RR42_RS01085 0.39 -0.4 253,945 + RR42_RS01085 0.47 +0.3 253,945 + RR42_RS01085 0.47 +0.3 254,077 + RR42_RS01085 0.68 -0.7 254,077 + RR42_RS01085 0.68 -0.5 254,078 - RR42_RS01085 0.68 +0.2 254,433 + RR42_RS01090 0.11 +2.2 254,434 - RR42_RS01090 0.11 -0.0
Or see this region's nucleotide sequence