Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_693

Experiment: Choline Lysine 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_691 and Pf1N1B4_692 are separated by 15 nucleotidesPf1N1B4_692 and Pf1N1B4_693 overlap by 4 nucleotidesPf1N1B4_693 and Pf1N1B4_694 are separated by 293 nucleotides Pf1N1B4_691 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 789,195 to 790,250 _691 Pf1N1B4_692 - ABC spermidine/putrescine transporter, inner membrane subunit, at 790,266 to 791,114 _692 Pf1N1B4_693 - ABC spermidine/putrescine transporter, inner membrane subunit, at 791,111 to 791,917 _693 Pf1N1B4_694 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 792,211 to 793,314 _694 Position (kb) 791 792Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 790.390 kb on + strand, within Pf1N1B4_692at 790.390 kb on + strand, within Pf1N1B4_692at 790.390 kb on + strand, within Pf1N1B4_692at 790.390 kb on + strand, within Pf1N1B4_692at 790.390 kb on + strand, within Pf1N1B4_692at 790.390 kb on + strand, within Pf1N1B4_692at 790.390 kb on + strand, within Pf1N1B4_692at 790.391 kb on - strand, within Pf1N1B4_692at 790.391 kb on - strand, within Pf1N1B4_692at 790.391 kb on - strand, within Pf1N1B4_692at 790.391 kb on - strand, within Pf1N1B4_692at 790.427 kb on - strand, within Pf1N1B4_692at 790.427 kb on - strand, within Pf1N1B4_692at 790.435 kb on + strand, within Pf1N1B4_692at 790.436 kb on - strand, within Pf1N1B4_692at 790.436 kb on - strand, within Pf1N1B4_692at 790.798 kb on + strand, within Pf1N1B4_692at 790.798 kb on + strand, within Pf1N1B4_692at 790.799 kb on - strandat 790.799 kb on - strand, within Pf1N1B4_692at 790.799 kb on - strand, within Pf1N1B4_692at 790.799 kb on - strand, within Pf1N1B4_692at 790.933 kb on + strandat 790.934 kb on - strand, within Pf1N1B4_692at 790.948 kb on + strand, within Pf1N1B4_692at 790.948 kb on + strand, within Pf1N1B4_692at 790.948 kb on + strand, within Pf1N1B4_692at 790.949 kb on - strand, within Pf1N1B4_692at 790.949 kb on - strand, within Pf1N1B4_692at 790.949 kb on - strand, within Pf1N1B4_692at 791.154 kb on + strandat 791.154 kb on + strandat 791.155 kb on - strandat 791.155 kb on - strandat 791.155 kb on - strandat 791.433 kb on + strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.530 kb on - strand, within Pf1N1B4_693at 791.712 kb on + strand, within Pf1N1B4_693at 791.712 kb on + strand, within Pf1N1B4_693at 791.713 kb on - strand, within Pf1N1B4_693at 791.793 kb on + strandat 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strand, within Pf1N1B4_693at 791.797 kb on - strandat 791.817 kb on + strand, within Pf1N1B4_693at 791.877 kb on - strandat 792.113 kb on + strandat 792.113 kb on + strandat 792.187 kb on + strandat 792.187 kb on + strandat 792.188 kb on - strandat 792.188 kb on - strandat 792.323 kb on + strand, within Pf1N1B4_694at 792.323 kb on + strand, within Pf1N1B4_694at 792.323 kb on + strand, within Pf1N1B4_694at 792.323 kb on + strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.324 kb on - strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strand, within Pf1N1B4_694at 792.380 kb on + strandat 792.380 kb on + strand, within Pf1N1B4_694at 792.381 kb on - strand, within Pf1N1B4_694at 792.381 kb on - strand, within Pf1N1B4_694at 792.381 kb on - strand, within Pf1N1B4_694at 792.441 kb on - strand, within Pf1N1B4_694at 792.441 kb on - strand, within Pf1N1B4_694at 792.500 kb on + strand, within Pf1N1B4_694at 792.500 kb on + strand, within Pf1N1B4_694at 792.500 kb on + strand, within Pf1N1B4_694at 792.501 kb on - strand, within Pf1N1B4_694at 792.539 kb on + strand, within Pf1N1B4_694at 792.540 kb on - strand, within Pf1N1B4_694at 792.581 kb on + strand, within Pf1N1B4_694at 792.581 kb on + strand, within Pf1N1B4_694at 792.582 kb on - strand, within Pf1N1B4_694at 792.666 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.818 kb on + strand, within Pf1N1B4_694at 792.819 kb on - strand, within Pf1N1B4_694at 792.819 kb on - strand, within Pf1N1B4_694at 792.855 kb on - strand, within Pf1N1B4_694

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 6 mM
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790,390 + Pf1N1B4_692 0.15 -0.2
790,390 + Pf1N1B4_692 0.15 -0.7
790,390 + Pf1N1B4_692 0.15 -0.6
790,390 + Pf1N1B4_692 0.15 -0.7
790,390 + Pf1N1B4_692 0.15 +2.3
790,390 + Pf1N1B4_692 0.15 +1.0
790,390 + Pf1N1B4_692 0.15 -2.2
790,391 - Pf1N1B4_692 0.15 -0.4
790,391 - Pf1N1B4_692 0.15 -0.2
790,391 - Pf1N1B4_692 0.15 -0.6
790,391 - Pf1N1B4_692 0.15 +0.3
790,427 - Pf1N1B4_692 0.19 +0.1
790,427 - Pf1N1B4_692 0.19 -0.3
790,435 + Pf1N1B4_692 0.20 +1.3
790,436 - Pf1N1B4_692 0.20 -2.6
790,436 - Pf1N1B4_692 0.20 +1.0
790,798 + Pf1N1B4_692 0.63 -0.6
790,798 + Pf1N1B4_692 0.63 -0.3
790,799 - +2.0
790,799 - Pf1N1B4_692 0.63 +1.1
790,799 - Pf1N1B4_692 0.63 +1.0
790,799 - Pf1N1B4_692 0.63 -1.3
790,933 + -0.6
790,934 - Pf1N1B4_692 0.79 -0.3
790,948 + Pf1N1B4_692 0.80 +2.0
790,948 + Pf1N1B4_692 0.80 +0.2
790,948 + Pf1N1B4_692 0.80 +0.1
790,949 - Pf1N1B4_692 0.80 -2.2
790,949 - Pf1N1B4_692 0.80 -0.0
790,949 - Pf1N1B4_692 0.80 +2.0
791,154 + -1.7
791,154 + -0.7
791,155 - +0.4
791,155 - +4.0
791,155 - -0.3
791,433 + Pf1N1B4_693 0.40 -2.0
791,530 - Pf1N1B4_693 0.52 -0.0
791,530 - Pf1N1B4_693 0.52 -0.7
791,530 - Pf1N1B4_693 0.52 -1.3
791,530 - Pf1N1B4_693 0.52 +1.0
791,712 + Pf1N1B4_693 0.74 -2.2
791,712 + Pf1N1B4_693 0.74 -0.5
791,713 - Pf1N1B4_693 0.75 -1.6
791,793 + +1.0
791,797 - Pf1N1B4_693 0.85 -1.0
791,797 - Pf1N1B4_693 0.85 +0.8
791,797 - Pf1N1B4_693 0.85 -0.0
791,797 - Pf1N1B4_693 0.85 -1.3
791,797 - Pf1N1B4_693 0.85 -0.6
791,797 - -0.0
791,817 + Pf1N1B4_693 0.87 -1.6
791,877 - +1.0
792,113 + +0.4
792,113 + -2.3
792,187 + +0.1
792,187 + -0.1
792,188 - +0.7
792,188 - -0.4
792,323 + Pf1N1B4_694 0.10 +0.3
792,323 + Pf1N1B4_694 0.10 -1.3
792,323 + Pf1N1B4_694 0.10 -0.0
792,323 + Pf1N1B4_694 0.10 -0.2
792,324 - Pf1N1B4_694 0.10 +2.0
792,324 - Pf1N1B4_694 0.10 +0.6
792,324 - Pf1N1B4_694 0.10 +1.0
792,324 - Pf1N1B4_694 0.10 +1.7
792,324 - Pf1N1B4_694 0.10 -0.4
792,380 + Pf1N1B4_694 0.15 -1.8
792,380 + Pf1N1B4_694 0.15 -0.3
792,380 + Pf1N1B4_694 0.15 +1.0
792,380 + Pf1N1B4_694 0.15 -1.0
792,380 + -1.0
792,380 + Pf1N1B4_694 0.15 -0.8
792,381 - Pf1N1B4_694 0.15 -0.0
792,381 - Pf1N1B4_694 0.15 +1.4
792,381 - Pf1N1B4_694 0.15 -0.4
792,441 - Pf1N1B4_694 0.21 -2.2
792,441 - Pf1N1B4_694 0.21 +0.5
792,500 + Pf1N1B4_694 0.26 +2.4
792,500 + Pf1N1B4_694 0.26 -0.7
792,500 + Pf1N1B4_694 0.26 -0.1
792,501 - Pf1N1B4_694 0.26 -0.3
792,539 + Pf1N1B4_694 0.30 -0.0
792,540 - Pf1N1B4_694 0.30 -0.8
792,581 + Pf1N1B4_694 0.34 +2.0
792,581 + Pf1N1B4_694 0.34 +1.0
792,582 - Pf1N1B4_694 0.34 -1.3
792,666 + Pf1N1B4_694 0.41 -0.6
792,818 + Pf1N1B4_694 0.55 -2.6
792,818 + Pf1N1B4_694 0.55 +1.0
792,818 + Pf1N1B4_694 0.55 -1.8
792,818 + Pf1N1B4_694 0.55 +1.4
792,819 - Pf1N1B4_694 0.55 -0.9
792,819 - Pf1N1B4_694 0.55 +0.8
792,855 - Pf1N1B4_694 0.58 +1.0

Or see this region's nucleotide sequence