Experiment: Choline Lysine 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_641 and Pf1N1B4_642 are separated by 122 nucleotides Pf1N1B4_642 and Pf1N1B4_643 are separated by 100 nucleotides Pf1N1B4_643 and Pf1N1B4_644 are separated by 464 nucleotides
Pf1N1B4_641 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 736,265 to 738,040
_641
Pf1N1B4_642 - Glycerate kinase (EC 2.7.1.31), at 738,163 to 738,420
_642
Pf1N1B4_643 - FIG00955846: hypothetical protein, at 738,521 to 738,859
_643
Pf1N1B4_644 - Cold shock protein CspC, at 739,324 to 739,926
_644
Position (kb) 738
739 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 738.108 kb on - strand at 738.108 kb on - strand at 738.165 kb on - strand at 738.165 kb on - strand at 738.274 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.451 kb on - strand at 738.458 kb on - strand at 738.458 kb on - strand at 738.458 kb on - strand at 738.458 kb on - strand at 738.479 kb on - strand at 738.485 kb on - strand at 738.485 kb on - strand at 738.485 kb on - strand at 738.679 kb on + strand, within Pf1N1B4_643 at 738.680 kb on - strand, within Pf1N1B4_643 at 738.691 kb on + strand, within Pf1N1B4_643 at 738.699 kb on + strand, within Pf1N1B4_643 at 738.699 kb on + strand at 738.700 kb on - strand, within Pf1N1B4_643 at 738.700 kb on - strand, within Pf1N1B4_643 at 738.700 kb on - strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.853 kb on - strand at 738.853 kb on - strand at 738.853 kb on - strand at 738.859 kb on + strand at 738.860 kb on - strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.897 kb on - strand at 738.897 kb on - strand at 738.941 kb on - strand at 738.941 kb on - strand at 738.954 kb on + strand at 738.954 kb on + strand at 738.954 kb on + strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.974 kb on - strand at 739.011 kb on - strand at 739.033 kb on + strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.181 kb on - strand at 739.223 kb on - strand at 739.347 kb on - strand at 739.409 kb on - strand, within Pf1N1B4_644
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 6 mM remove 738,108 - +3.4 738,108 - +0.8 738,165 - +0.7 738,165 - +0.5 738,274 - Pf1N1B4_642 0.43 -0.2 738,375 - Pf1N1B4_642 0.82 +0.1 738,375 - Pf1N1B4_642 0.82 +0.8 738,375 - Pf1N1B4_642 0.82 +1.3 738,375 - Pf1N1B4_642 0.82 -0.0 738,375 - Pf1N1B4_642 0.82 +0.4 738,375 - Pf1N1B4_642 0.82 +1.8 738,375 - Pf1N1B4_642 0.82 -1.0 738,375 - Pf1N1B4_642 0.82 +3.0 738,375 - Pf1N1B4_642 0.82 +1.1 738,375 - Pf1N1B4_642 0.82 -0.7 738,375 - -0.0 738,375 - Pf1N1B4_642 0.82 +1.2 738,375 - Pf1N1B4_642 0.82 +0.8 738,375 - Pf1N1B4_642 0.82 +1.0 738,375 - Pf1N1B4_642 0.82 -0.0 738,449 - -0.6 738,449 - +1.2 738,449 - +1.2 738,449 - +0.2 738,449 - +2.0 738,449 - +0.5 738,449 - +1.7 738,449 - -0.5 738,449 - +0.4 738,449 - +2.0 738,449 - -0.8 738,449 - -0.1 738,449 - -0.0 738,451 - -0.0 738,458 - -0.0 738,458 - +1.2 738,458 - -0.3 738,458 - -0.3 738,479 - +0.7 738,485 - +1.0 738,485 - -2.3 738,485 - -0.0 738,679 + Pf1N1B4_643 0.47 +1.5 738,680 - Pf1N1B4_643 0.47 -1.0 738,691 + Pf1N1B4_643 0.50 +0.2 738,699 + Pf1N1B4_643 0.53 +0.7 738,699 + +2.0 738,700 - Pf1N1B4_643 0.53 -0.0 738,700 - Pf1N1B4_643 0.53 -0.2 738,700 - Pf1N1B4_643 0.53 +1.2 738,806 + Pf1N1B4_643 0.84 +1.5 738,806 + Pf1N1B4_643 0.84 -0.6 738,806 + Pf1N1B4_643 0.84 -0.6 738,806 + Pf1N1B4_643 0.84 +1.6 738,806 + Pf1N1B4_643 0.84 +0.9 738,806 + Pf1N1B4_643 0.84 +1.0 738,807 - Pf1N1B4_643 0.84 -1.6 738,807 - Pf1N1B4_643 0.84 -0.0 738,807 - Pf1N1B4_643 0.84 +1.1 738,807 - Pf1N1B4_643 0.84 -0.0 738,807 - Pf1N1B4_643 0.84 +1.0 738,807 - Pf1N1B4_643 0.84 +0.4 738,807 - Pf1N1B4_643 0.84 +3.1 738,807 - Pf1N1B4_643 0.84 -1.2 738,807 - Pf1N1B4_643 0.84 +0.2 738,807 - Pf1N1B4_643 0.84 +0.2 738,807 - Pf1N1B4_643 0.84 +0.4 738,807 - Pf1N1B4_643 0.84 -0.0 738,807 - Pf1N1B4_643 0.84 +0.1 738,807 - Pf1N1B4_643 0.84 +1.3 738,807 - Pf1N1B4_643 0.84 -0.0 738,807 - Pf1N1B4_643 0.84 -1.6 738,853 - -1.0 738,853 - -0.0 738,853 - -0.8 738,859 + +0.6 738,860 - -0.1 738,892 + +1.5 738,892 + -1.1 738,892 + +1.3 738,892 + +0.7 738,892 + -1.9 738,892 + -1.0 738,892 + +0.2 738,892 + +0.7 738,892 + -0.6 738,892 + -1.0 738,892 + +1.0 738,892 + -1.6 738,893 - -1.1 738,893 - +0.8 738,893 - -0.0 738,893 - -0.3 738,893 - -0.8 738,893 - +0.7 738,893 - -0.6 738,893 - +0.5 738,893 - -0.3 738,893 - +1.6 738,893 - +1.3 738,894 + -0.8 738,894 + +1.0 738,894 + -1.3 738,894 + +0.2 738,894 + +3.3 738,894 + -0.0 738,894 + +2.6 738,895 - -1.3 738,895 - +0.6 738,895 - +1.0 738,895 - +1.2 738,895 - +1.0 738,895 - +0.5 738,895 - -0.6 738,895 - +1.0 738,895 - +0.2 738,895 - +0.2 738,895 - -0.5 738,895 - +1.3 738,895 - +1.3 738,895 - -0.4 738,895 - -0.0 738,895 - +1.0 738,895 - +1.0 738,895 - +0.0 738,895 - -0.0 738,895 - +2.0 738,895 - +1.6 738,895 - +1.4 738,895 - +0.6 738,895 - +0.3 738,895 - -0.6 738,895 - -0.5 738,895 - +1.2 738,895 - +0.2 738,895 - +3.1 738,895 - +0.3 738,895 - +1.4 738,895 - +2.8 738,897 - +0.4 738,897 - +0.5 738,941 - +1.5 738,941 - -0.3 738,954 + +0.7 738,954 + +2.0 738,954 + -0.0 738,955 - -0.6 738,955 - -0.0 738,955 - +0.5 738,955 - +1.6 738,955 - -1.3 738,955 - +0.6 738,955 - +1.3 738,955 - +0.3 738,955 - +1.4 738,955 - +0.7 738,955 - -0.5 738,955 - +0.5 738,968 + -1.0 738,968 + -0.2 738,968 + +0.2 738,968 + +1.6 738,968 + +1.6 738,969 - +0.9 738,969 - +0.3 738,969 - +1.6 738,969 - +1.2 738,969 - +0.6 738,969 - +2.0 738,969 - +1.0 738,969 - +0.0 738,969 - -0.2 738,974 - +0.3 739,011 - +1.0 739,033 + -0.2 739,034 - +1.7 739,034 - +1.0 739,034 - +0.9 739,034 - -0.2 739,034 - +2.5 739,034 - +0.9 739,034 - +1.0 739,034 - +0.2 739,034 - +0.5 739,034 - +2.2 739,034 - +1.6 739,034 - +0.1 739,181 - -1.3 739,223 - -0.2 739,347 - -2.0 739,409 - Pf1N1B4_644 0.14 -0.6
Or see this region's nucleotide sequence