Experiment: Choline Lysine 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5930 and Pf1N1B4_5931 are separated by 141 nucleotides Pf1N1B4_5931 and Pf1N1B4_5932 overlap by 4 nucleotides
Pf1N1B4_5930 - Exopolysaccharide production protein ExoZ, at 375,011 to 376,126
_5930
Pf1N1B4_5931 - hypothetical protein, at 376,268 to 376,627
_5931
Pf1N1B4_5932 - YjbH outer membrane lipoprotein, at 376,624 to 378,726
_5932
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.024 kb on - strand at 374.048 kb on - strand at 374.102 kb on - strand at 374.102 kb on - strand at 374.102 kb on - strand at 374.102 kb on - strand at 374.104 kb on - strand at 374.104 kb on - strand at 374.104 kb on - strand at 374.352 kb on - strand at 374.352 kb on - strand at 374.352 kb on - strand at 374.416 kb on - strand at 374.510 kb on - strand at 374.570 kb on - strand at 374.728 kb on - strand at 374.801 kb on + strand at 374.910 kb on + strand at 374.911 kb on - strand at 374.945 kb on + strand at 374.945 kb on + strand at 374.945 kb on + strand at 374.945 kb on + strand at 374.960 kb on + strand at 374.960 kb on + strand at 375.013 kb on - strand at 375.071 kb on - strand at 375.107 kb on + strand at 375.108 kb on - strand at 375.117 kb on + strand at 375.117 kb on + strand at 375.118 kb on - strand at 375.197 kb on + strand, within Pf1N1B4_5930 at 375.198 kb on - strand, within Pf1N1B4_5930 at 375.241 kb on - strand, within Pf1N1B4_5930 at 375.241 kb on - strand, within Pf1N1B4_5930 at 375.250 kb on - strand, within Pf1N1B4_5930 at 375.276 kb on - strand, within Pf1N1B4_5930 at 375.276 kb on - strand, within Pf1N1B4_5930 at 375.290 kb on - strand, within Pf1N1B4_5930 at 375.290 kb on - strand, within Pf1N1B4_5930 at 375.357 kb on - strand, within Pf1N1B4_5930 at 375.357 kb on - strand, within Pf1N1B4_5930 at 375.410 kb on + strand, within Pf1N1B4_5930 at 375.413 kb on - strand, within Pf1N1B4_5930 at 375.416 kb on + strand, within Pf1N1B4_5930 at 375.444 kb on + strand, within Pf1N1B4_5930 at 375.445 kb on - strand, within Pf1N1B4_5930 at 375.445 kb on - strand, within Pf1N1B4_5930 at 375.494 kb on - strand at 375.513 kb on + strand, within Pf1N1B4_5930 at 375.672 kb on - strand, within Pf1N1B4_5930 at 375.738 kb on - strand at 375.739 kb on + strand, within Pf1N1B4_5930 at 375.739 kb on + strand, within Pf1N1B4_5930 at 375.789 kb on - strand, within Pf1N1B4_5930 at 376.000 kb on - strand, within Pf1N1B4_5930 at 376.040 kb on - strand at 376.047 kb on - strand at 376.059 kb on - strand at 376.066 kb on - strand at 376.108 kb on + strand at 376.108 kb on + strand at 376.109 kb on - strand at 376.113 kb on - strand at 376.113 kb on - strand at 376.115 kb on + strand at 376.116 kb on - strand at 376.180 kb on - strand at 376.180 kb on - strand at 376.229 kb on + strand at 376.319 kb on - strand, within Pf1N1B4_5931 at 376.319 kb on - strand, within Pf1N1B4_5931
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 6 mM remove 374,024 - -0.3 374,048 - +0.6 374,102 - -0.8 374,102 - +1.1 374,102 - +0.6 374,102 - +1.6 374,104 - +1.0 374,104 - -0.4 374,104 - +0.1 374,352 - -0.0 374,352 - -2.3 374,352 - -0.1 374,416 - +0.6 374,510 - -1.0 374,570 - +0.7 374,728 - -0.4 374,801 + -0.4 374,910 + -0.7 374,911 - -2.6 374,945 + -1.6 374,945 + -1.0 374,945 + +1.6 374,945 + -0.4 374,960 + -1.4 374,960 + +0.2 375,013 - -0.9 375,071 - -0.4 375,107 + +0.6 375,108 - +1.6 375,117 + +1.9 375,117 + +1.6 375,118 - +0.7 375,197 + Pf1N1B4_5930 0.17 +0.4 375,198 - Pf1N1B4_5930 0.17 +1.0 375,241 - Pf1N1B4_5930 0.21 +0.3 375,241 - Pf1N1B4_5930 0.21 -0.0 375,250 - Pf1N1B4_5930 0.21 +0.3 375,276 - Pf1N1B4_5930 0.24 +1.0 375,276 - Pf1N1B4_5930 0.24 -1.0 375,290 - Pf1N1B4_5930 0.25 -0.0 375,290 - Pf1N1B4_5930 0.25 +1.7 375,357 - Pf1N1B4_5930 0.31 +1.7 375,357 - Pf1N1B4_5930 0.31 +2.0 375,410 + Pf1N1B4_5930 0.36 -0.2 375,413 - Pf1N1B4_5930 0.36 -0.0 375,416 + Pf1N1B4_5930 0.36 +1.7 375,444 + Pf1N1B4_5930 0.39 -0.4 375,445 - Pf1N1B4_5930 0.39 +1.0 375,445 - Pf1N1B4_5930 0.39 +0.4 375,494 - -0.4 375,513 + Pf1N1B4_5930 0.45 +1.1 375,672 - Pf1N1B4_5930 0.59 +1.7 375,738 - -0.2 375,739 + Pf1N1B4_5930 0.65 +2.2 375,739 + Pf1N1B4_5930 0.65 -1.4 375,789 - Pf1N1B4_5930 0.70 +0.6 376,000 - Pf1N1B4_5930 0.89 +1.7 376,040 - +2.2 376,047 - +1.1 376,059 - +0.7 376,066 - +1.0 376,108 + +2.5 376,108 + +0.1 376,109 - -0.9 376,113 - +2.4 376,113 - +0.6 376,115 + +0.2 376,116 - +0.9 376,180 - +1.1 376,180 - -1.0 376,229 + -1.0 376,319 - Pf1N1B4_5931 0.14 +0.1 376,319 - Pf1N1B4_5931 0.14 +0.3
Or see this region's nucleotide sequence