Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5409

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
142,268	+				-1.8
142,269	-				-0.2
142,269	-				+0.6
142,357	+				+2.2
142,357	+				-0.0
142,358	-				+0.2
142,452	-				-1.4
142,523	-				+1.2
142,593	+		Pf1N1B4_5407	0.19	+0.2
142,665	+		Pf1N1B4_5407	0.53	-0.2
142,665	+		Pf1N1B4_5407	0.53	-0.2
142,666	-		Pf1N1B4_5407	0.54	-0.4
142,666	-		Pf1N1B4_5407	0.54	+0.8
142,666	-				+0.6
142,766	+				+1.2
142,766	+				+1.2
142,766	+				+0.4
142,766	+				+0.3
142,766	+				-0.2
142,766	+				-0.2
142,767	-				+0.2
142,767	-				-2.5
142,819	-				-0.8
142,877	+		Pf1N1B4_5408	0.19	+0.6
142,877	+		Pf1N1B4_5408	0.19	-1.4
142,877	+		Pf1N1B4_5408	0.19	-2.2
142,878	-		Pf1N1B4_5408	0.20	-1.3
142,878	-		Pf1N1B4_5408	0.20	+0.6
142,878	-				+0.2
142,879	+		Pf1N1B4_5408	0.20	-0.7
142,879	+				+1.9
142,880	-		Pf1N1B4_5408	0.21	+2.0
142,982	-		Pf1N1B4_5408	0.64	-0.2
142,989	+		Pf1N1B4_5408	0.67	-0.2
142,989	+		Pf1N1B4_5408	0.67	+0.3
142,990	-		Pf1N1B4_5408	0.68	+0.3
143,064	-				+1.6
143,081	+				+0.9
143,134	-				-0.2
143,134	-				+0.2
143,134	-				+0.1
143,169	-		Pf1N1B4_5409	0.14	-1.4
143,180	+				-1.6
143,181	-		Pf1N1B4_5409	0.17	+1.2
143,181	-		Pf1N1B4_5409	0.17	+1.2
143,181	-				-1.6
143,192	+		Pf1N1B4_5409	0.19	+0.9
143,192	+		Pf1N1B4_5409	0.19	+0.8
143,192	+		Pf1N1B4_5409	0.19	-1.2
143,192	+				+1.2
143,193	-		Pf1N1B4_5409	0.19	-1.2
143,193	-		Pf1N1B4_5409	0.19	-0.2
143,373	-		Pf1N1B4_5409	0.59	+0.6
143,373	-		Pf1N1B4_5409	0.59	+0.8
143,373	-		Pf1N1B4_5409	0.59	-1.5
143,413	-		Pf1N1B4_5409	0.67	+1.4
143,436	-		Pf1N1B4_5409	0.72	-0.3
143,436	-		Pf1N1B4_5409	0.72	-0.1
143,440	+		Pf1N1B4_5409	0.73	-0.2
143,440	+		Pf1N1B4_5409	0.73	+2.2
143,441	-		Pf1N1B4_5409	0.73	-1.2
143,441	-		Pf1N1B4_5409	0.73	+0.6
143,441	-				+2.2
143,441	-		Pf1N1B4_5409	0.73	+0.4
143,441	-				+2.8
143,441	-		Pf1N1B4_5409	0.73	+1.5
143,441	-				-0.8
143,441	-		Pf1N1B4_5409	0.73	-0.6
143,441	-		Pf1N1B4_5409	0.73	+0.8
143,444	+		Pf1N1B4_5409	0.74	+1.2
143,445	-		Pf1N1B4_5409	0.74	-0.6
143,445	-		Pf1N1B4_5409	0.74	+1.3
143,466	-		Pf1N1B4_5409	0.79	-1.0
143,525	+				-0.6
143,525	+				-0.8
143,526	-				+0.2
143,562	+				-0.4
143,562	+				-0.4
143,562	+				+1.2
143,562	+				-1.2
143,625	-				+0.3
143,649	+				+0.4
143,671	+				+0.4
143,672	-				-2.2
143,680	-				-1.4
143,747	+				-1.4
143,747	+				-0.2
143,747	+				+0.6
143,747	+				+0.8
143,747	+				-1.0
143,747	+				-0.4
143,748	-				+0.8
143,748	-				+0.1
143,748	-				+1.0
143,748	-				-0.9
143,748	-				-0.1
143,748	-				+0.9
143,748	-				-0.4
143,748	-				-0.0
143,748	-				+0.4
143,748	-				-0.1
143,748	-				+1.4
143,748	-				+1.0
143,765	+				+0.6
143,765	+				-1.8
143,765	+				+2.5
143,766	-				+1.5
143,766	-				-0.1
143,788	+				+1.2
143,788	+				-0.4
143,788	+				-1.4
143,788	+				+0.4
143,788	+				+0.3
143,788	+				-0.6
143,788	+				-0.2
143,788	+				-0.2
143,788	+				+0.4
143,789	-				-0.7
143,789	-				-1.0
143,789	-				-0.8
143,789	-				+1.2
143,789	-				-0.2
143,789	-				-0.1
143,789	-				+0.6
143,789	-				+0.9
143,789	-				-0.8
143,792	+				+0.4
143,792	+				-0.3
143,793	-				+1.8
143,809	+				+0.4
143,809	+				+0.3
143,817	+				+0.7
143,818	-				-2.7
143,909	+				+0.2
143,909	+				-0.8
143,922	+				-0.4
143,943	+				+0.2
143,943	+				-0.8
143,943	+				+0.4
143,943	+				-1.4
143,943	+				-0.2
143,943	+				+0.5
143,944	-				-1.8
143,944	-				+1.2
143,944	-				+0.9
143,944	-				+0.4
143,944	-				-1.4
144,039	-				+1.4
144,046	+				-2.0
144,046	+				+1.2
144,046	+				-1.2
144,046	+				+0.4
144,046	+				+1.0
144,046	+				-0.6
144,046	+				-1.2
144,046	+				-0.8
144,046	+				+0.9
144,046	+				+0.2
144,046	+				+1.2
144,046	+				+0.3
144,046	+				+0.2
144,046	+				+2.2
144,046	+				-1.1
144,046	+				-0.1
144,046	+				-0.2
144,046	+				+0.4
144,046	+				+0.8
144,047	-				-0.4
144,047	-				+2.0
144,047	-				+2.5
144,047	-				-0.4
144,047	-				+1.5
144,047	-				-0.4
144,047	-				+0.0
144,047	-				-0.8
144,047	-				-1.2
144,047	-				-0.8
144,047	-				+1.2
144,068	-				+2.0
144,086	+				+0.2
144,087	-				+1.8
144,263	-				+0.9
144,298	+				+0.6
144,311	+				+0.7
144,312	-				+0.0
144,323	-				+0.2
144,362	+		Pf1N1B4_5410	0.12	+0.2
144,362	+		Pf1N1B4_5410	0.12	+0.2
144,363	-				-0.8
144,363	-		Pf1N1B4_5410	0.12	-1.2
144,364	+		Pf1N1B4_5410	0.12	+1.4
144,365	-		Pf1N1B4_5410	0.12	-1.6
144,365	-				+2.2
144,365	-		Pf1N1B4_5410	0.12	-0.4
144,458	-				-0.4
144,458	-		Pf1N1B4_5410	0.16	+0.7
144,458	-		Pf1N1B4_5410	0.16	+1.2
144,470	-		Pf1N1B4_5410	0.17	+1.0