Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4872

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
5,390,995	+				+1.2
5,390,995	+				-1.4
5,390,995	+				-0.3
5,390,996	-				+0.0
5,390,996	-				+0.3
5,391,271	+		Pf1N1B4_4870	0.45	+0.8
5,391,271	+				-0.7
5,391,393	+		Pf1N1B4_4870	0.71	-0.3
5,391,394	-		Pf1N1B4_4870	0.71	+0.9
5,391,394	-		Pf1N1B4_4870	0.71	+0.3
5,391,487	+				+2.2
5,391,500	+				-1.6
5,391,501	-				-0.3
5,391,596	+				+0.3
5,391,597	-				+0.8
5,391,727	+		Pf1N1B4_4871	0.34	-0.1
5,391,947	+				-0.8
5,391,947	+				-1.3
5,391,947	+				-1.5
5,391,947	+				-0.7
5,391,947	+				-0.1
5,391,948	-				-0.7
5,391,951	+				-2.0
5,392,028	+				-0.7
5,392,028	+				-0.7
5,392,490	+		Pf1N1B4_4872	0.61	-0.4
5,392,555	+		Pf1N1B4_4872	0.69	+0.3
5,392,556	-		Pf1N1B4_4872	0.69	-0.1
5,392,579	+		Pf1N1B4_4872	0.72	+0.2
5,392,580	-		Pf1N1B4_4872	0.72	+0.3
5,392,782	+				+0.1
5,392,782	+				+1.5
5,393,002	-		Pf1N1B4_4873	0.19	-0.9
5,393,153	-		Pf1N1B4_4873	0.39	-2.5
5,393,216	+				+0.3
5,393,216	+				+0.3
5,393,216	+		Pf1N1B4_4873	0.47	+0.3
5,393,217	-		Pf1N1B4_4873	0.47	-1.3
5,393,316	+		Pf1N1B4_4873	0.60	-2.3
5,393,330	+				-0.7
5,393,331	-		Pf1N1B4_4873	0.62	-1.3
5,393,331	-		Pf1N1B4_4873	0.62	-2.0
5,393,340	-		Pf1N1B4_4873	0.64	-0.6
5,393,498	+		Pf1N1B4_4873	0.84	-0.7
5,393,550	+				-1.7
5,393,550	-				+1.0
5,393,550	-				-1.3
5,393,550	-				-1.5
5,393,550	-				-0.7
5,393,616	-				-0.1
5,393,679	+				-0.7
5,393,694	+				+1.6
5,393,694	+				-0.4
5,393,694	+				-0.9
5,393,694	+				+0.4
5,393,694	+				+0.3
5,393,695	-				-0.6
5,393,695	-				-0.1
5,393,695	-				-1.3
5,393,695	-				+0.3
5,393,695	-				-0.9
5,393,695	-				-1.3
5,393,794	-				-0.5