Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4861
Experiment: Choline Lysine 6 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Choline Lysine 6 mM |
|---|---|---|---|---|---|
| remove | |||||
| 5,374,789 | - | Pf1N1B4_4860 | 0.77 | -1.2 | |
| 5,375,235 | - | -2.3 | |||
| 5,375,254 | + | -0.8 | |||
| 5,375,431 | - | Pf1N1B4_4861 | 0.16 | -0.7 | |
| 5,375,514 | - | Pf1N1B4_4861 | 0.21 | -0.7 | |
| 5,375,944 | + | Pf1N1B4_4861 | 0.50 | -0.4 | |
| 5,375,945 | - | Pf1N1B4_4861 | 0.50 | +0.1 | |
| 5,375,946 | + | Pf1N1B4_4861 | 0.50 | -1.3 | |
| 5,375,946 | + | Pf1N1B4_4861 | 0.50 | -1.3 | |
| 5,375,946 | + | Pf1N1B4_4861 | 0.50 | -1.3 | |
| 5,375,947 | - | Pf1N1B4_4861 | 0.50 | -0.8 | |
| 5,375,947 | - | Pf1N1B4_4861 | 0.50 | +0.3 | |
| 5,375,949 | - | Pf1N1B4_4861 | 0.50 | -2.0 | |
| 5,375,949 | - | Pf1N1B4_4861 | 0.50 | +0.3 | |
| 5,375,949 | - | Pf1N1B4_4861 | 0.50 | +2.3 | |
| 5,375,949 | - | Pf1N1B4_4861 | 0.50 | -1.5 | |
| 5,376,206 | + | Pf1N1B4_4861 | 0.68 | +0.6 | |
| 5,376,207 | - | Pf1N1B4_4861 | 0.68 | +1.3 | |
| 5,376,365 | + | Pf1N1B4_4861 | 0.78 | +0.3 | |
| 5,376,365 | + | Pf1N1B4_4861 | 0.78 | -1.5 | |
| 5,376,507 | - | Pf1N1B4_4861 | 0.88 | +1.3 | |
| 5,376,687 | + | -0.3 | |||
| 5,376,812 | + | +0.6 | |||
| 5,376,812 | + | +0.3 | |||
| 5,376,813 | - | -1.5 | |||
| 5,377,049 | - | -1.3 |
Or see this region's nucleotide sequence