Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_398

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
466,601	+		Pf1N1B4_397	0.43	-0.2
466,601	+		Pf1N1B4_397	0.43	+0.3
466,602	-		Pf1N1B4_397	0.43	-0.8
466,659	+		Pf1N1B4_397	0.47	-0.7
466,660	-		Pf1N1B4_397	0.47	+0.3
466,904	+		Pf1N1B4_397	0.66	-1.7
466,904	+		Pf1N1B4_397	0.66	-0.2
466,904	+		Pf1N1B4_397	0.66	+0.4
466,904	+		Pf1N1B4_397	0.66	-0.2
466,905	-		Pf1N1B4_397	0.66	-0.2
466,905	-		Pf1N1B4_397	0.66	-0.5
466,974	-		Pf1N1B4_397	0.71	+0.3
467,085	+				-0.7
467,087	+		Pf1N1B4_397	0.80	-0.2
467,087	+		Pf1N1B4_397	0.80	+0.8
467,088	-		Pf1N1B4_397	0.80	-0.7
467,252	+				-0.2
467,252	+				-1.2
467,252	+				-0.2
467,252	+				-1.2
467,253	-				-0.7
467,368	+				+0.8
467,368	+				+0.3
467,368	+				+0.3
467,368	+				-1.2
467,368	+				-1.1
467,368	+				-1.5
467,369	-				+0.4
467,369	-				-0.3
467,369	-				-0.0
467,369	-				+0.7
467,369	-				+1.3
467,369	-				+0.5
467,369	-				-1.9
467,374	+				-0.5
467,374	+				-2.5
467,375	-				-1.2
467,375	-				+0.1
467,631	+				-0.2
467,631	+				-0.2
467,632	-				-0.2
467,632	-				-1.5
467,632	-				+0.1
467,722	-		Pf1N1B4_398	0.15	-0.6
467,748	+		Pf1N1B4_398	0.17	-1.7
467,748	+		Pf1N1B4_398	0.17	-2.3
467,748	+		Pf1N1B4_398	0.17	-1.2
467,748	+		Pf1N1B4_398	0.17	+0.1
467,749	-		Pf1N1B4_398	0.17	-2.0
467,749	-		Pf1N1B4_398	0.17	-2.0
467,865	+		Pf1N1B4_398	0.28	+1.1
467,866	-		Pf1N1B4_398	0.28	+0.1
467,866	-		Pf1N1B4_398	0.28	-0.4
467,946	+		Pf1N1B4_398	0.35	+0.4
467,946	+		Pf1N1B4_398	0.35	-1.5
467,946	+		Pf1N1B4_398	0.35	+0.6
467,947	-		Pf1N1B4_398	0.35	-0.6
468,091	-		Pf1N1B4_398	0.47	-1.5
468,130	+		Pf1N1B4_398	0.51	-0.7
468,348	+		Pf1N1B4_398	0.70	-1.0
468,349	-		Pf1N1B4_398	0.70	-0.2
468,349	-		Pf1N1B4_398	0.70	+0.5
468,480	+		Pf1N1B4_398	0.81	-1.5
468,480	+		Pf1N1B4_398	0.81	-0.2
468,480	+		Pf1N1B4_398	0.81	-0.5
468,495	+		Pf1N1B4_398	0.82	-1.7
468,546	+		Pf1N1B4_398	0.87	+0.4
468,547	-				+2.4
468,547	-		Pf1N1B4_398	0.87	-1.2
468,699	+				-1.7
468,700	-				-0.7
468,700	-				-0.4
468,700	-				+0.4
468,700	-				-0.2
468,712	-				-0.2
468,712	-				-1.0
468,712	-				-1.7
468,712	-				+1.4
468,712	-				+0.6
468,714	+				+0.1
468,714	+				-0.3
468,715	-				-1.2
468,715	-				+1.4
468,715	-				-0.5
468,715	-				-0.7
468,715	-				-1.0
468,715	-				-0.7
468,715	-				+1.4
468,715	-				-0.1
468,772	+				+0.4
468,772	+				-0.7
468,772	+				-0.2
468,772	+				-0.7
468,773	-				-1.2
468,773	-				-0.7
468,773	-				-1.2
468,773	-				-0.2
469,196	+		Pf1N1B4_399	0.73	-0.7
469,197	-		Pf1N1B4_399	0.73	-1.5
469,214	+		Pf1N1B4_399	0.76	-1.7
469,222	+		Pf1N1B4_399	0.77	-0.2
469,223	-		Pf1N1B4_399	0.77	-0.7
469,239	-		Pf1N1B4_399	0.80	-1.2
469,274	-		Pf1N1B4_399	0.85	+0.8
469,629	-		Pf1N1B4_400	0.25	-0.8