Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3964

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
4,403,099	+		Pf1N1B4_3963	0.35	+0.1
4,403,099	+		Pf1N1B4_3963	0.35	-1.3
4,403,100	-		Pf1N1B4_3963	0.35	-1.6
4,403,100	-		Pf1N1B4_3963	0.35	+0.5
4,403,100	-		Pf1N1B4_3963	0.35	+0.4
4,403,107	-		Pf1N1B4_3963	0.35	-0.4
4,403,252	+		Pf1N1B4_3963	0.46	-0.4
4,403,253	-		Pf1N1B4_3963	0.46	-1.6
4,403,476	+		Pf1N1B4_3963	0.62	+0.7
4,403,476	+		Pf1N1B4_3963	0.62	+1.2
4,403,476	+		Pf1N1B4_3963	0.62	+0.7
4,403,476	+		Pf1N1B4_3963	0.62	+0.5
4,403,477	-		Pf1N1B4_3963	0.62	+0.0
4,403,526	+		Pf1N1B4_3963	0.65	-0.5
4,403,646	+				+2.3
4,403,684	+		Pf1N1B4_3963	0.77	-0.3
4,403,725	+		Pf1N1B4_3963	0.80	+0.7
4,403,876	-				-0.6
4,404,054	+				-1.0
4,404,355	+		Pf1N1B4_3964	0.24	-1.6
4,404,434	+				-1.6
4,404,435	-		Pf1N1B4_3964	0.30	-1.0
4,404,435	-		Pf1N1B4_3964	0.30	-0.5
4,404,435	-		Pf1N1B4_3964	0.30	+0.7
4,404,435	-		Pf1N1B4_3964	0.30	-1.6
4,404,435	-		Pf1N1B4_3964	0.30	+0.6
4,404,436	+				+1.3
4,404,437	-		Pf1N1B4_3964	0.30	-0.5
4,404,907	-		Pf1N1B4_3964	0.63	-0.4
4,404,907	-		Pf1N1B4_3964	0.63	-1.2
4,404,938	-				-1.3
4,404,994	+		Pf1N1B4_3964	0.69	+0.7
4,404,994	+		Pf1N1B4_3964	0.69	+0.1
4,404,995	-		Pf1N1B4_3964	0.69	-2.3
4,405,178	-		Pf1N1B4_3964	0.82	-1.0
4,405,632	+				-0.3
4,405,632	+				-0.3
4,405,632	+				-0.3
4,405,632	+				-0.7
4,405,632	+				-1.6
4,405,632	+				-0.2
4,405,632	+				-0.9
4,405,633	-				-1.9
4,405,633	-				-0.5
4,405,914	+		Pf1N1B4_3965	0.35	-1.5
4,405,914	+		Pf1N1B4_3965	0.35	-1.0
4,405,914	+				+2.3
4,406,348	+				-0.6
4,406,349	-				+0.1
4,406,370	+				-1.0