Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3827

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
4,240,906	+		Pf1N1B4_3826	0.66	+0.4
4,240,906	+		Pf1N1B4_3826	0.66	-1.0
4,240,981	+		Pf1N1B4_3826	0.70	-0.7
4,240,981	+		Pf1N1B4_3826	0.70	-0.5
4,240,981	+		Pf1N1B4_3826	0.70	+0.9
4,240,981	+		Pf1N1B4_3826	0.70	+1.0
4,240,981	+		Pf1N1B4_3826	0.70	-0.2
4,240,982	-		Pf1N1B4_3826	0.70	+1.1
4,241,104	+		Pf1N1B4_3826	0.75	-1.0
4,241,155	+		Pf1N1B4_3826	0.77	-0.5
4,241,155	+		Pf1N1B4_3826	0.77	-0.2
4,241,156	-		Pf1N1B4_3826	0.77	-0.1
4,241,156	-		Pf1N1B4_3826	0.77	+0.8
4,241,496	+				-1.2
4,241,496	+				-1.2
4,241,529	+				+0.2
4,241,529	+				-1.2
4,241,557	+				+0.8
4,241,558	-				-0.6
4,241,754	+				-1.8
4,241,768	+				+0.8
4,241,769	-				+2.2
4,241,769	-				+0.3
4,241,843	+				+0.8
4,241,843	+				-1.6
4,241,844	-				+1.7
4,241,844	-				+1.0
4,241,844	-				-0.2
4,241,851	+				-0.1
4,241,897	-				+1.3
4,241,897	-				-0.6
4,241,897	-				+0.0
4,241,916	+				-0.2
4,241,916	+				+0.9
4,241,916	+				+1.8
4,241,916	+				+0.8
4,241,916	+				+0.2
4,241,917	-				-1.8
4,241,917	-				+2.4
4,241,917	-				+0.9
4,241,917	-				+0.1
4,241,917	-				+0.8
4,241,917	-				+0.8
4,241,917	-				-1.7
4,242,141	-		Pf1N1B4_3827	0.25	+1.1
4,242,141	-		Pf1N1B4_3827	0.25	+1.1
4,242,248	+		Pf1N1B4_3827	0.35	-0.4
4,242,359	+		Pf1N1B4_3827	0.47	+0.2
4,242,359	+		Pf1N1B4_3827	0.47	+1.2
4,242,359	+		Pf1N1B4_3827	0.47	-1.6
4,242,359	+		Pf1N1B4_3827	0.47	-0.8
4,242,359	+		Pf1N1B4_3827	0.47	+1.0
4,242,359	+		Pf1N1B4_3827	0.47	+0.5
4,242,359	+		Pf1N1B4_3827	0.47	+0.8
4,242,360	-		Pf1N1B4_3827	0.47	+1.1
4,242,360	-		Pf1N1B4_3827	0.47	+1.6
4,242,360	-		Pf1N1B4_3827	0.47	+0.4
4,242,360	-		Pf1N1B4_3827	0.47	+0.6
4,242,360	-		Pf1N1B4_3827	0.47	+1.1
4,242,360	-		Pf1N1B4_3827	0.47	+2.4
4,242,360	-		Pf1N1B4_3827	0.47	-1.0
4,242,360	-		Pf1N1B4_3827	0.47	-0.2
4,242,360	-		Pf1N1B4_3827	0.47	+0.9
4,242,360	-		Pf1N1B4_3827	0.47	-1.6
4,242,360	-		Pf1N1B4_3827	0.47	+1.1
4,242,360	-		Pf1N1B4_3827	0.47	+2.4
4,242,415	+		Pf1N1B4_3827	0.52	+0.4
4,242,416	-		Pf1N1B4_3827	0.52	+0.2
4,242,420	-				+1.8
4,242,754	+		Pf1N1B4_3827	0.87	+1.4
4,242,898	+				-2.2
4,242,898	+				-0.1
4,242,899	-				+1.8
4,242,899	-				+0.4
4,242,932	+				+0.4
4,242,937	+				+0.8
4,242,938	-				+3.6
4,242,938	-				-1.8
4,242,938	-				+1.4
4,242,938	-				-0.1
4,242,947	+				-0.8
4,243,017	+				+0.5
4,243,018	-				+1.1
4,243,018	-				+0.7
4,243,018	-				+1.9
4,243,046	+				-1.8
4,243,070	+				-1.2
4,243,070	+				+1.4
4,243,070	+				+1.8
4,243,071	-				+0.5
4,243,071	-				+0.1
4,243,097	+				-0.6
4,243,195	+		Pf1N1B4_3828	0.27	-0.4
4,243,195	+				+0.2
4,243,218	+				-0.2
4,243,218	+		Pf1N1B4_3828	0.32	-0.6
4,243,237	+		Pf1N1B4_3828	0.36	+0.5
4,243,341	-		Pf1N1B4_3828	0.57	+1.2
4,243,341	-		Pf1N1B4_3828	0.57	+1.0
4,243,341	-		Pf1N1B4_3828	0.57	+1.4
4,243,341	-		Pf1N1B4_3828	0.57	+1.2
4,243,341	-		Pf1N1B4_3828	0.57	+1.2
4,243,341	-		Pf1N1B4_3828	0.57	+1.8
4,243,341	-		Pf1N1B4_3828	0.57	+0.6
4,243,341	-		Pf1N1B4_3828	0.57	+3.1
4,243,341	-		Pf1N1B4_3828	0.57	+1.3
4,243,341	-		Pf1N1B4_3828	0.57	-0.8
4,243,341	-		Pf1N1B4_3828	0.57	+2.3
4,243,341	-				-0.2
4,243,341	-		Pf1N1B4_3828	0.57	+1.7
4,243,341	-		Pf1N1B4_3828	0.57	+1.9
4,243,448	-		Pf1N1B4_3828	0.79	+3.0
4,243,448	-		Pf1N1B4_3828	0.79	+2.0
4,243,490	+				+3.1
4,243,490	+		Pf1N1B4_3828	0.87	+0.4
4,243,491	-				+1.4
4,243,491	-		Pf1N1B4_3828	0.87	+1.1
4,243,491	-		Pf1N1B4_3828	0.87	+1.3
4,243,491	-		Pf1N1B4_3828	0.87	+0.9
4,243,491	-		Pf1N1B4_3828	0.87	+0.5
4,243,491	-		Pf1N1B4_3828	0.87	+1.4
4,243,491	-		Pf1N1B4_3828	0.87	+1.0
4,243,491	-		Pf1N1B4_3828	0.87	+2.2
4,243,491	-		Pf1N1B4_3828	0.87	+1.4
4,243,491	-		Pf1N1B4_3828	0.87	+1.5
4,243,491	-		Pf1N1B4_3828	0.87	+2.2
4,243,491	-		Pf1N1B4_3828	0.87	-0.2
4,243,497	-		Pf1N1B4_3828	0.89	+0.0
4,243,551	-				+1.4
4,243,566	-				+0.8
4,243,634	+				-0.1
4,243,751	+		Pf1N1B4_3829	0.17	-0.4
4,243,751	+		Pf1N1B4_3829	0.17	-0.1
4,243,751	+		Pf1N1B4_3829	0.17	+0.2
4,243,755	+		Pf1N1B4_3829	0.18	-0.1
4,243,755	+		Pf1N1B4_3829	0.18	+0.6
4,243,755	+		Pf1N1B4_3829	0.18	+1.2
4,243,755	+		Pf1N1B4_3829	0.18	+0.6
4,243,755	+		Pf1N1B4_3829	0.18	+0.2
4,243,755	+		Pf1N1B4_3829	0.18	-0.0
4,243,756	-		Pf1N1B4_3829	0.18	+1.4
4,243,756	-		Pf1N1B4_3829	0.18	+1.4
4,243,775	+		Pf1N1B4_3829	0.20	+0.5
4,243,775	+		Pf1N1B4_3829	0.20	-0.2
4,243,775	+		Pf1N1B4_3829	0.20	+0.8
4,243,775	+		Pf1N1B4_3829	0.20	+1.0
4,243,775	+		Pf1N1B4_3829	0.20	+0.8
4,243,776	-		Pf1N1B4_3829	0.20	+1.6
4,243,776	-		Pf1N1B4_3829	0.20	+0.8
4,243,776	-		Pf1N1B4_3829	0.20	+2.5