Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3500

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
3,903,452	+		Pf1N1B4_3498	0.68	-0.1
3,903,462	-				-0.7
3,903,462	-		Pf1N1B4_3498	0.70	+0.2
3,903,475	+		Pf1N1B4_3498	0.73	-1.1
3,903,478	+		Pf1N1B4_3498	0.74	-0.1
3,903,478	+		Pf1N1B4_3498	0.74	+0.3
3,903,479	-		Pf1N1B4_3498	0.74	+0.4
3,903,479	-		Pf1N1B4_3498	0.74	-2.1
3,903,571	-				+0.3
3,903,605	+				-0.9
3,903,605	+				+0.9
3,903,605	+				+0.1
3,903,605	+				+2.9
3,903,606	-				+2.2
3,903,606	-				-0.1
3,903,606	-				-0.3
3,903,614	+				-0.9
3,903,654	+				-1.7
3,903,654	+				-0.1
3,903,655	-				-0.1
3,903,655	-				-1.3
3,903,715	+				+0.1
3,903,786	+				+1.2
3,903,787	-				-0.7
3,903,918	+		Pf1N1B4_3499	0.13	-0.8
3,903,919	-		Pf1N1B4_3499	0.13	-0.3
3,904,238	+		Pf1N1B4_3500	0.12	-2.3
3,904,238	+		Pf1N1B4_3500	0.12	+0.4
3,904,238	+		Pf1N1B4_3500	0.12	-0.1
3,904,238	+		Pf1N1B4_3500	0.12	-1.1
3,904,238	+		Pf1N1B4_3500	0.12	+0.5
3,904,238	+		Pf1N1B4_3500	0.12	-0.9
3,904,239	-		Pf1N1B4_3500	0.12	-0.4
3,904,330	-		Pf1N1B4_3500	0.21	-0.7
3,904,330	-		Pf1N1B4_3500	0.21	+1.6
3,904,421	+		Pf1N1B4_3500	0.31	-2.8
3,904,421	+		Pf1N1B4_3500	0.31	+0.2
3,904,421	+		Pf1N1B4_3500	0.31	+0.5
3,904,421	+		Pf1N1B4_3500	0.31	+0.1
3,904,422	-		Pf1N1B4_3500	0.31	-0.8
3,904,737	+		Pf1N1B4_3500	0.63	-1.5
3,904,737	+		Pf1N1B4_3500	0.63	+0.1
3,904,737	+		Pf1N1B4_3500	0.63	-1.1
3,904,737	+		Pf1N1B4_3500	0.63	-2.1
3,904,738	-				-0.1
3,904,809	+		Pf1N1B4_3500	0.70	-1.5
3,904,809	+		Pf1N1B4_3500	0.70	+0.7
3,904,810	-		Pf1N1B4_3500	0.70	-0.3
3,904,929	-		Pf1N1B4_3500	0.82	-0.6
3,905,076	+				-0.4
3,905,077	-				-0.4
3,905,125	+				+1.2
3,905,125	+				+1.9
3,905,126	-				+0.5
3,905,126	-				-1.1
3,905,132	-				-0.7
3,905,219	-				-0.1
3,905,273	+				-0.7
3,905,295	+				+1.2
3,905,607	+		Pf1N1B4_3501	0.11	-1.1
3,905,607	+				+0.9
3,905,608	-		Pf1N1B4_3501	0.11	+0.3
3,905,608	-		Pf1N1B4_3501	0.11	-0.7
3,905,608	-		Pf1N1B4_3501	0.11	+0.2
3,905,752	+		Pf1N1B4_3501	0.16	-1.5
3,905,752	+		Pf1N1B4_3501	0.16	+0.4
3,905,753	-		Pf1N1B4_3501	0.16	-1.5
3,905,753	-		Pf1N1B4_3501	0.16	-1.9
3,905,753	-		Pf1N1B4_3501	0.16	-1.5
3,905,753	-				+2.9