Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3259

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
3,647,044	+		Pf1N1B4_3257	0.65	-1.4
3,647,045	-		Pf1N1B4_3257	0.65	-0.6
3,647,045	-		Pf1N1B4_3257	0.65	-0.6
3,647,045	-		Pf1N1B4_3257	0.65	-1.0
3,647,050	+		Pf1N1B4_3257	0.65	-0.2
3,647,051	-				-0.0
3,647,051	-		Pf1N1B4_3257	0.66	-0.5
3,647,051	-		Pf1N1B4_3257	0.66	+0.4
3,647,305	+				+1.0
3,647,305	+		Pf1N1B4_3257	0.89	-1.9
3,647,306	-		Pf1N1B4_3257	0.89	-0.5
3,647,306	-		Pf1N1B4_3257	0.89	-2.0
3,647,384	+				-1.0
3,647,384	+				+1.2
3,647,385	-				-1.0
3,647,385	-				+0.4
3,647,441	+				+0.8
3,647,554	-		Pf1N1B4_3258	0.39	+0.8
3,647,554	-		Pf1N1B4_3258	0.39	-2.2
3,647,568	+		Pf1N1B4_3258	0.44	-0.6
3,647,568	+		Pf1N1B4_3258	0.44	-1.3
3,647,568	+		Pf1N1B4_3258	0.44	+0.4
3,647,569	-		Pf1N1B4_3258	0.44	+0.7
3,647,569	-		Pf1N1B4_3258	0.44	-0.6
3,647,583	+		Pf1N1B4_3258	0.48	-0.6
3,647,584	-		Pf1N1B4_3258	0.48	+1.0
3,647,619	+		Pf1N1B4_3258	0.59	+0.4
3,647,620	-		Pf1N1B4_3258	0.59	-0.3
3,647,631	+		Pf1N1B4_3258	0.63	-0.6
3,647,632	-		Pf1N1B4_3258	0.63	+0.2
3,647,632	-		Pf1N1B4_3258	0.63	-0.6
3,647,632	-		Pf1N1B4_3258	0.63	-0.9
3,647,632	-		Pf1N1B4_3258	0.63	-1.5
3,647,699	+		Pf1N1B4_3258	0.83	+0.4
3,647,700	-		Pf1N1B4_3258	0.84	+1.1
3,647,813	+				-1.0
3,647,835	-				-1.3
3,647,970	-				+0.7
3,647,970	-				+0.1
3,647,988	-				-1.2
3,647,988	-				+0.2
3,647,988	-				+2.1
3,647,988	-				+1.0
3,648,108	-		Pf1N1B4_3259	0.20	-1.0
3,648,119	+		Pf1N1B4_3259	0.22	-0.6
3,648,302	-		Pf1N1B4_3259	0.53	-0.3
3,648,302	-				+0.2
3,648,387	+		Pf1N1B4_3259	0.68	-0.3
3,648,387	+		Pf1N1B4_3259	0.68	+0.8
3,648,387	+		Pf1N1B4_3259	0.68	-1.6
3,648,387	+		Pf1N1B4_3259	0.68	-0.9
3,648,387	+		Pf1N1B4_3259	0.68	-2.2
3,648,388	-		Pf1N1B4_3259	0.68	+0.4
3,648,388	-		Pf1N1B4_3259	0.68	-1.2
3,648,388	-		Pf1N1B4_3259	0.68	-1.5
3,648,388	-		Pf1N1B4_3259	0.68	-0.6
3,648,388	-				+1.0
3,648,388	-		Pf1N1B4_3259	0.68	-0.6
3,648,706	+		Pf1N1B4_3260	0.11	-0.3
3,648,707	-		Pf1N1B4_3260	0.11	+0.7
3,648,707	-		Pf1N1B4_3260	0.11	-1.4
3,648,802	+		Pf1N1B4_3260	0.19	-0.4
3,648,871	+		Pf1N1B4_3260	0.25	+1.5
3,648,871	+				+1.4
3,648,872	-		Pf1N1B4_3260	0.25	-0.0
3,649,189	+		Pf1N1B4_3260	0.53	+0.3
3,649,279	+		Pf1N1B4_3260	0.60	-1.0
3,649,390	+		Pf1N1B4_3260	0.70	+2.0
3,649,405	+		Pf1N1B4_3260	0.71	-0.2
3,649,409	-		Pf1N1B4_3260	0.72	-1.9
3,649,448	-		Pf1N1B4_3260	0.75	+0.4