Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3129

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
3,514,134	+		Pf1N1B4_3128	0.20	+0.6
3,514,135	-		Pf1N1B4_3128	0.20	+0.3
3,514,159	-		Pf1N1B4_3128	0.23	-0.6
3,514,159	-		Pf1N1B4_3128	0.23	+0.6
3,514,159	-		Pf1N1B4_3128	0.23	-2.2
3,514,296	+		Pf1N1B4_3128	0.36	-0.3
3,514,296	+		Pf1N1B4_3128	0.36	-0.4
3,514,296	+		Pf1N1B4_3128	0.36	+0.5
3,514,296	+		Pf1N1B4_3128	0.36	+1.4
3,514,296	+		Pf1N1B4_3128	0.36	+0.2
3,514,296	+		Pf1N1B4_3128	0.36	+0.3
3,514,296	+		Pf1N1B4_3128	0.36	-0.7
3,514,297	-		Pf1N1B4_3128	0.36	+0.5
3,514,297	-				+1.1
3,514,297	-				+0.7
3,514,297	-		Pf1N1B4_3128	0.36	+0.7
3,514,297	-		Pf1N1B4_3128	0.36	-0.7
3,514,297	-		Pf1N1B4_3128	0.36	-0.9
3,514,372	+		Pf1N1B4_3128	0.43	-0.5
3,514,372	+		Pf1N1B4_3128	0.43	+1.5
3,514,373	-		Pf1N1B4_3128	0.43	-1.1
3,514,373	-		Pf1N1B4_3128	0.43	+0.1
3,514,373	-		Pf1N1B4_3128	0.43	-0.2
3,514,373	-		Pf1N1B4_3128	0.43	-1.1
3,514,373	-		Pf1N1B4_3128	0.43	+0.7
3,514,502	+		Pf1N1B4_3128	0.56	+0.6
3,514,502	+		Pf1N1B4_3128	0.56	-1.9
3,514,502	+		Pf1N1B4_3128	0.56	-0.5
3,514,530	+		Pf1N1B4_3128	0.58	-0.5
3,514,531	-		Pf1N1B4_3128	0.58	-0.4
3,514,638	+		Pf1N1B4_3128	0.69	+0.5
3,514,638	+		Pf1N1B4_3128	0.69	-0.5
3,514,639	-		Pf1N1B4_3128	0.69	-0.8
3,514,639	-		Pf1N1B4_3128	0.69	+0.3
3,514,639	-		Pf1N1B4_3128	0.69	-0.5
3,514,639	-		Pf1N1B4_3128	0.69	+0.4
3,514,639	-		Pf1N1B4_3128	0.69	+0.3
3,514,755	+		Pf1N1B4_3128	0.80	-1.4
3,514,755	+		Pf1N1B4_3128	0.80	-0.5
3,514,755	+		Pf1N1B4_3128	0.80	+0.8
3,514,756	-		Pf1N1B4_3128	0.80	-0.1
3,514,756	-		Pf1N1B4_3128	0.80	-1.5
3,514,756	-		Pf1N1B4_3128	0.80	-0.5
3,514,872	+				-1.7
3,514,872	+				-1.5
3,514,873	-				+0.1
3,514,873	-				-0.7
3,514,873	-				+0.1
3,514,926	-				-1.5
3,515,030	+				+1.1
3,515,030	+				-1.5
3,515,030	+				+1.1
3,515,031	-				-0.1
3,515,038	-				-0.9
3,515,107	+				-0.9
3,515,108	-				-0.4
3,515,371	-		Pf1N1B4_3129	0.53	-1.2
3,515,371	-		Pf1N1B4_3129	0.53	+0.1
3,515,371	-				+1.1
3,515,543	-		Pf1N1B4_3129	0.87	-0.4
3,515,743	+		Pf1N1B4_3130	0.34	-1.1
3,515,831	+		Pf1N1B4_3130	0.56	-0.9
3,515,831	+		Pf1N1B4_3130	0.56	+0.2
3,515,832	-		Pf1N1B4_3130	0.56	-0.6
3,515,996	+				-1.2
3,515,996	+				-0.4
3,515,997	-				+0.5
3,515,997	-				-0.9
3,515,997	-				-0.6
3,515,997	-				-0.7
3,515,997	-				+1.7
3,515,997	-				-0.2
3,515,997	-				+0.9
3,515,997	-				+0.1
3,516,324	+		Pf1N1B4_3131	0.31	+0.3
3,516,324	+		Pf1N1B4_3131	0.31	+2.1
3,516,324	+		Pf1N1B4_3131	0.31	+0.7
3,516,325	-		Pf1N1B4_3131	0.31	-0.3
3,516,325	-		Pf1N1B4_3131	0.31	+1.1
3,516,465	-		Pf1N1B4_3131	0.45	+0.1
3,516,465	-		Pf1N1B4_3131	0.45	-0.5
3,516,585	+		Pf1N1B4_3131	0.56	+0.9
3,516,585	+		Pf1N1B4_3131	0.56	-0.5
3,516,586	-		Pf1N1B4_3131	0.56	+0.7