Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2105

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
2,416,179	+		Pf1N1B4_2104	0.37	-0.5
2,416,179	+		Pf1N1B4_2104	0.37	-0.8
2,416,179	+		Pf1N1B4_2104	0.37	-1.6
2,416,180	-		Pf1N1B4_2104	0.37	-1.1
2,416,341	+		Pf1N1B4_2104	0.48	-0.5
2,416,342	-		Pf1N1B4_2104	0.49	+2.5
2,416,342	-		Pf1N1B4_2104	0.49	+1.2
2,416,401	-		Pf1N1B4_2104	0.53	-1.3
2,416,731	+		Pf1N1B4_2104	0.76	-0.1
2,416,732	-		Pf1N1B4_2104	0.76	-1.1
2,416,802	+		Pf1N1B4_2104	0.81	+0.4
2,416,821	-		Pf1N1B4_2104	0.83	-1.7
2,416,939	+				-1.1
2,416,980	+				-0.5
2,417,095	+				-1.2
2,417,095	+				+0.5
2,417,095	+				-0.1
2,417,095	+				-1.7
2,417,095	+				-0.1
2,417,095	+				-0.8
2,417,095	+				+0.6
2,417,095	+				+0.5
2,417,095	+				-0.1
2,417,096	-				+0.3
2,417,096	-				-0.8
2,417,096	-				+0.0
2,417,096	-				+1.3
2,417,096	-				-0.3
2,417,701	-		Pf1N1B4_2105	0.27	-0.5
2,417,701	-		Pf1N1B4_2105	0.27	-0.8
2,418,435	+		Pf1N1B4_2105	0.62	+0.2
2,418,435	+		Pf1N1B4_2105	0.62	-0.1
2,418,826	-		Pf1N1B4_2105	0.81	-0.8
2,418,838	-		Pf1N1B4_2105	0.82	-2.0
2,419,660	-		Pf1N1B4_2106	0.47	+0.5
2,419,660	-		Pf1N1B4_2106	0.47	-1.3
2,419,660	-		Pf1N1B4_2106	0.47	-2.0
2,419,660	-		Pf1N1B4_2106	0.47	-1.7
2,419,788	+		Pf1N1B4_2106	0.60	-2.1
2,419,789	-		Pf1N1B4_2106	0.61	-0.5
2,419,789	-		Pf1N1B4_2106	0.61	-1.0
2,419,789	-		Pf1N1B4_2106	0.61	-1.1
2,419,789	-		Pf1N1B4_2106	0.61	-0.8
2,420,134	-				-0.5
2,420,134	-				-1.1
2,420,138	+				-1.1
2,420,138	+				+0.2
2,420,155	+				-0.5
2,420,155	+				-0.1
2,420,156	-				+0.2
2,420,156	-				-1.1
2,420,156	-				+1.5
2,420,188	-				-1.0