Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2102

Experiment: Choline Lysine 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 6 mM
2,413,151	+		Pf1N1B4_2101	0.39	+0.4
2,413,200	+		Pf1N1B4_2101	0.43	+0.1
2,413,344	+		Pf1N1B4_2101	0.53	+0.8
2,413,487	+		Pf1N1B4_2101	0.64	-0.5
2,413,488	-		Pf1N1B4_2101	0.64	-0.1
2,413,546	+		Pf1N1B4_2101	0.68	-0.1
2,413,546	+		Pf1N1B4_2101	0.68	+0.5
2,413,546	+		Pf1N1B4_2101	0.68	+1.0
2,413,547	-		Pf1N1B4_2101	0.68	+1.2
2,413,547	-		Pf1N1B4_2101	0.68	+1.7
2,413,550	+		Pf1N1B4_2101	0.69	-0.1
2,413,550	+		Pf1N1B4_2101	0.69	+0.7
2,413,550	+		Pf1N1B4_2101	0.69	+0.8
2,413,550	+		Pf1N1B4_2101	0.69	+0.2
2,413,550	+		Pf1N1B4_2101	0.69	-0.5
2,413,550	+		Pf1N1B4_2101	0.69	+0.3
2,413,550	+		Pf1N1B4_2101	0.69	-0.7
2,413,550	+		Pf1N1B4_2101	0.69	-0.2
2,413,550	+		Pf1N1B4_2101	0.69	-0.4
2,413,550	+		Pf1N1B4_2101	0.69	-1.0
2,413,550	+		Pf1N1B4_2101	0.69	-1.0
2,413,550	+		Pf1N1B4_2101	0.69	-0.8
2,413,550	+		Pf1N1B4_2101	0.69	+0.8
2,413,550	+		Pf1N1B4_2101	0.69	-0.4
2,413,550	+				+1.5
2,413,550	+		Pf1N1B4_2101	0.69	+0.5
2,413,550	+		Pf1N1B4_2101	0.69	-2.0
2,413,551	-		Pf1N1B4_2101	0.69	+1.5
2,413,551	-		Pf1N1B4_2101	0.69	-0.1
2,413,729	+		Pf1N1B4_2101	0.82	+0.6
2,413,729	+		Pf1N1B4_2101	0.82	+0.8
2,413,730	-		Pf1N1B4_2101	0.82	-1.1
2,413,730	-		Pf1N1B4_2101	0.82	-1.1
2,413,773	+		Pf1N1B4_2101	0.85	-0.1
2,413,809	+		Pf1N1B4_2101	0.88	+1.0
2,413,810	-		Pf1N1B4_2101	0.88	+1.5
2,413,810	-		Pf1N1B4_2101	0.88	+0.5
2,413,813	+		Pf1N1B4_2101	0.88	+2.8
2,413,814	-		Pf1N1B4_2101	0.88	-0.2
2,413,814	-		Pf1N1B4_2101	0.88	+0.4
2,413,814	-		Pf1N1B4_2101	0.88	+1.1
2,413,814	-		Pf1N1B4_2101	0.88	-1.2
2,413,857	+				+2.1
2,413,857	+				+0.1
2,413,857	+				-1.6
2,413,858	-				-1.5
2,413,858	-				-0.8
2,413,955	+				+1.5
2,413,955	+				-0.1
2,413,955	+				+0.8
2,413,956	-				-1.1
2,413,956	-				+0.5
2,413,956	-				-0.3
2,413,956	-				+0.5
2,413,956	-				-0.4
2,413,956	-				+1.0
2,413,993	+				-0.2
2,413,993	+				-0.2
2,413,993	+				+0.5
2,413,993	+				-1.5
2,413,993	+				-0.8
2,413,994	-				+0.8
2,413,994	-				+3.1
2,413,994	-				-0.1
2,413,995	+				-1.5
2,413,995	+				-0.4
2,413,995	+				-1.3
2,413,995	+				+0.2
2,413,995	+				-0.7
2,413,995	+				-1.5
2,413,995	+				+0.9
2,413,996	-				-1.2
2,413,996	-				-1.1
2,414,032	+				+1.1
2,414,032	+				+0.4
2,414,093	-				-0.8
2,414,107	+				+0.5
2,414,108	-				+0.1
2,414,108	-				-0.4
2,414,147	+		Pf1N1B4_2102	0.11	+0.1
2,414,147	+		Pf1N1B4_2102	0.11	-0.5
2,414,148	-		Pf1N1B4_2102	0.11	-0.5
2,414,148	-		Pf1N1B4_2102	0.11	-0.6
2,414,492	+				-1.8
2,414,492	+				-0.1
2,414,492	+				+1.5
2,414,492	+				-0.3
2,414,492	+				-0.8
2,414,492	+				-0.8
2,414,493	-				+0.5
2,414,504	+				-0.6
2,414,504	+				+0.3
2,414,504	+				+0.2
2,414,505	-				+2.1
2,414,505	-				+0.1
2,414,511	+				-0.5
2,414,511	+				+0.8
2,414,511	+				+0.4
2,414,512	-				-0.5
2,414,553	+				+0.4
2,414,553	+				-1.7
2,414,553	+				-0.6
2,414,554	-				+0.6
2,414,554	-				-0.5
2,414,554	-				+0.8
2,414,554	-				+0.8
2,414,554	-				+1.5
2,414,555	+				-1.5
2,414,555	+				+1.9
2,414,555	+				-1.0
2,414,555	+				+1.3
2,414,555	+				+0.5
2,414,555	+				-0.8
2,414,555	+				-1.1
2,414,555	+				-0.3
2,414,555	+				+0.5
2,414,555	+				+0.8
2,414,555	+				+1.7
2,414,555	+				-1.0
2,414,555	+				-2.0
2,414,555	+				-0.5
2,414,555	+				+0.5
2,414,556	-				+0.5
2,414,556	-				+0.8
2,414,556	-				-0.3
2,414,556	-				+0.5
2,414,556	-				-0.1
2,414,556	-				+1.5
2,414,556	-				+0.8
2,414,556	-				-1.7
2,414,556	-				-1.1
2,414,556	-				+0.3
2,414,556	-				-1.4
2,414,556	-				+0.8
2,414,556	-				-1.5
2,414,556	-				-1.3
2,414,556	-				-2.6
2,414,556	-				-1.8
2,414,556	-				+0.8
2,414,556	-				-1.9
2,414,556	-				-2.1
2,414,556	-				+1.5
2,414,556	-				-1.5
2,414,556	-				-1.3
2,414,556	-				-1.3
2,414,556	-				-0.8
2,414,556	-				+0.3
2,414,556	-				-0.5
2,414,634	+				+0.5
2,414,634	+				-0.7
2,414,634	+				-0.8
2,414,635	-				-1.7
2,414,635	-				+0.3
2,414,635	-				+0.3
2,414,635	-				-2.1
2,414,653	+				-1.3
2,414,654	-				+3.1
2,414,750	+				-0.1
2,414,750	+				-0.4
2,414,750	+				-0.2
2,414,751	-				+1.5
2,414,751	-				-0.8
2,414,751	-				+1.2
2,414,839	-				-0.5
2,414,839	-				-0.8
2,414,862	+				+0.6
2,414,862	+				-1.1
2,414,995	+				-0.1
2,415,034	-				+0.1
2,415,134	+		Pf1N1B4_2103	0.16	-0.6
2,415,134	+		Pf1N1B4_2103	0.16	+0.5
2,415,135	-		Pf1N1B4_2103	0.16	-1.0
2,415,184	+		Pf1N1B4_2103	0.29	-1.7
2,415,184	+		Pf1N1B4_2103	0.29	-1.2
2,415,184	+		Pf1N1B4_2103	0.29	+0.5
2,415,184	+		Pf1N1B4_2103	0.29	-1.7
2,415,185	-		Pf1N1B4_2103	0.29	-0.1
2,415,239	+		Pf1N1B4_2103	0.43	-0.3
2,415,240	-		Pf1N1B4_2103	0.44	-0.3
2,415,258	+		Pf1N1B4_2103	0.48	-1.3
2,415,258	+		Pf1N1B4_2103	0.48	+1.1
2,415,258	+		Pf1N1B4_2103	0.48	-0.9
2,415,258	+		Pf1N1B4_2103	0.48	+0.1
2,415,258	+		Pf1N1B4_2103	0.48	+0.1
2,415,258	+		Pf1N1B4_2103	0.48	+1.5
2,415,258	+		Pf1N1B4_2103	0.48	-0.2
2,415,258	+		Pf1N1B4_2103	0.48	+1.5
2,415,259	-		Pf1N1B4_2103	0.49	-0.2
2,415,259	-		Pf1N1B4_2103	0.49	+0.3
2,415,344	+		Pf1N1B4_2103	0.71	-0.5
2,415,344	+		Pf1N1B4_2103	0.71	-0.1
2,415,345	-		Pf1N1B4_2103	0.71	+0.7
2,415,345	-		Pf1N1B4_2103	0.71	-1.7
2,415,345	-		Pf1N1B4_2103	0.71	-0.5
2,415,423	+				+1.5
2,415,423	+				-0.3
2,415,423	+				+0.5
2,415,424	-				-0.7
2,415,434	+				+0.3
2,415,434	+				+0.3