Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01004

Experiment: PYE with Cisplatin 0.0025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Cisplatin 0.0025 mg/ml
1,084,229	+		CCNA_01002	0.33	-1.2
1,084,252	-		CCNA_01002	0.36	-1.2
1,084,252	-		CCNA_01002	0.36	+0.1
1,084,264	-		CCNA_01002	0.38	-2.0
1,084,292	-		CCNA_01002	0.41	-0.1
1,084,295	+		CCNA_01002	0.42	-0.1
1,084,295	+		CCNA_01002	0.42	-1.1
1,084,339	+		CCNA_01002	0.47	+0.6
1,084,342	-		CCNA_01002	0.48	-0.6
1,084,401	-		CCNA_01002	0.55	-0.7
1,084,431	+		CCNA_01002	0.59	-1.0
1,084,436	+		CCNA_01002	0.59	+0.2
1,084,451	+		CCNA_01002	0.61	-2.6
1,084,459	-		CCNA_01002	0.62	-0.1
1,084,459	-		CCNA_01002	0.62	-1.2
1,084,492	-		CCNA_01002	0.66	-1.7
1,084,494	+		CCNA_01002	0.67	-1.0
1,084,497	-		CCNA_01002	0.67	-0.0
1,084,503	-		CCNA_01002	0.68	-0.5
1,084,503	-		CCNA_01002	0.68	+0.1
1,084,556	-		CCNA_01002	0.74	-2.2
1,084,556	-		CCNA_01002	0.74	+0.4
1,084,563	-		CCNA_01002	0.75	-0.1
1,084,563	-		CCNA_01002	0.75	+0.1
1,084,567	+		CCNA_01002	0.76	-1.3
1,084,602	+		CCNA_01002	0.80	-1.3
1,084,605	-		CCNA_01002	0.80	-0.4
1,084,605	-		CCNA_01002	0.80	-0.4
1,084,618	-		CCNA_01002	0.82	+0.5
1,084,645	-		CCNA_01002	0.85	-0.6
1,084,650	-		CCNA_01002	0.86	+0.5
1,084,675	-		CCNA_01002	0.89	+0.5
1,084,680	-		CCNA_01002	0.90	-0.6
1,084,680	-		CCNA_01002	0.90	-0.9
1,084,696	-				-0.2
1,084,723	-				+0.9
1,084,723	-				+0.8
1,084,732	+				-0.2
1,084,739	+				-1.8
1,084,739	+				-1.0
1,084,747	-				+1.1
1,084,764	+				+1.1
1,084,844	-		CCNA_01003	0.26	-0.5
1,084,865	-		CCNA_01003	0.32	-0.7
1,084,917	-		CCNA_01003	0.49	-1.7
1,084,922	-		CCNA_01003	0.50	-0.4
1,084,937	+		CCNA_01003	0.55	-1.4
1,084,937	+		CCNA_01003	0.55	-0.0
1,084,937	+		CCNA_01003	0.55	-0.8
1,084,937	+		CCNA_01003	0.55	+0.6
1,084,937	+		CCNA_01003	0.55	-0.0
1,084,945	-		CCNA_01003	0.57	+0.4
1,084,945	-		CCNA_01003	0.57	+0.3
1,084,945	-		CCNA_01003	0.57	+1.7
1,084,945	-		CCNA_01003	0.57	-0.2
1,084,945	-		CCNA_01003	0.57	-0.5
1,084,945	-		CCNA_01003	0.57	-0.8
1,084,945	-		CCNA_01003	0.57	-2.4
1,084,958	-		CCNA_01003	0.61	-0.0
1,084,958	-		CCNA_01003	0.61	-0.8
1,084,971	-		CCNA_01003	0.65	-1.3
1,084,995	+		CCNA_01003	0.73	+0.2
1,085,001	-		CCNA_01003	0.75	-1.9
1,085,027	+		CCNA_01003	0.83	-1.0
1,085,035	-		CCNA_01003	0.85	-1.0
1,085,069	-				+0.3
1,085,084	+				-0.0
1,085,084	-				+1.4
1,085,092	-				+0.9
1,085,092	-				+1.0
1,085,104	+				-2.3
1,085,105	-				-0.6
1,085,112	-				+0.5
1,085,117	-				-0.1
1,085,127	-				+0.8
1,085,138	-				+0.3
1,085,140	+				+2.3
1,085,175	-				+0.2
1,085,199	+				+0.5
1,085,199	+				+0.8
1,085,199	+				+3.8
1,085,199	+				+2.0
1,085,199	+				+0.5
1,085,207	-				-0.7
1,085,207	-				+0.2
1,085,207	-				+1.1
1,085,229	+				-0.0
1,085,291	+		CCNA_01004	0.21	+0.2
1,085,307	+		CCNA_01004	0.25	+1.8
1,085,307	-		CCNA_01004	0.25	+0.5
1,085,320	+		CCNA_01004	0.28	+2.2
1,085,320	+		CCNA_01004	0.28	+0.6
1,085,383	-				+1.8
1,085,401	+		CCNA_01004	0.46	+0.6
1,085,444	-		CCNA_01004	0.56	-0.7
1,085,444	-		CCNA_01004	0.56	+2.1
1,085,581	+		CCNA_01004	0.87	+1.0
1,085,606	+				+0.9
1,085,609	+				+0.9
1,085,635	+				+0.7
1,085,635	+				+0.6
1,085,643	+				+0.1
1,085,650	-				-0.5
1,085,663	-				+0.4
1,085,666	+				+0.8
1,085,675	-				-1.5
1,085,676	+				+0.4
1,085,688	+				+0.9
1,085,696	-		CCNA_01005	0.10	+0.7
1,085,698	+		CCNA_01005	0.11	+0.1
1,085,698	+		CCNA_01005	0.11	+0.8
1,085,715	+		CCNA_01005	0.15	+1.3
1,085,715	+		CCNA_01005	0.15	+0.8
1,085,721	+		CCNA_01005	0.16	+1.3
1,085,723	-		CCNA_01005	0.17	-0.4
1,085,767	-		CCNA_01005	0.27	+1.5
1,085,767	-		CCNA_01005	0.27	-2.3
1,085,813	+		CCNA_01005	0.38	+0.9
1,085,828	+		CCNA_01005	0.42	+0.6
1,085,882	+		CCNA_01005	0.55	+3.6
1,085,927	+		CCNA_01005	0.65	+0.4
1,085,927	+		CCNA_01005	0.65	+0.7
1,085,927	+		CCNA_01005	0.65	-0.4
1,085,935	-		CCNA_01005	0.67	+1.4
1,085,935	-		CCNA_01005	0.67	+1.5
1,085,935	-		CCNA_01005	0.67	+1.2
1,085,936	-		CCNA_01005	0.68	+1.6
1,085,936	-		CCNA_01005	0.68	+1.5
1,085,940	-		CCNA_01005	0.69	-2.2
1,085,942	+		CCNA_01005	0.69	+1.0
1,085,974	+		CCNA_01005	0.77	+1.2
1,085,995	+		CCNA_01005	0.82	+0.4
1,086,015	-		CCNA_01005	0.86	-2.3
1,086,016	-		CCNA_01005	0.87	-3.0
1,086,025	-		CCNA_01005	0.89	-2.0
1,086,042	-				-0.9
1,086,066	+				+1.8
1,086,072	+				+1.3
1,086,079	+				+0.9
1,086,108	+				+0.6
1,086,108	+				+1.2
1,086,116	-		CCNA_01006	0.11	+0.3
1,086,143	+		CCNA_01006	0.20	+0.9
1,086,163	+		CCNA_01006	0.26	+3.0
1,086,168	+		CCNA_01006	0.28	+1.2
1,086,168	+		CCNA_01006	0.28	+1.3
1,086,168	+		CCNA_01006	0.28	+1.2
1,086,176	-		CCNA_01006	0.30	-0.8
1,086,195	+		CCNA_01006	0.36	+0.9
1,086,201	-		CCNA_01006	0.38	-0.2
1,086,205	+		CCNA_01006	0.39	+0.9
1,086,213	-				+0.8
1,086,227	-		CCNA_01006	0.46	-0.7
1,086,243	+		CCNA_01006	0.52	+1.2
1,086,310	+		CCNA_01006	0.73	+0.8
1,086,310	+		CCNA_01006	0.73	+1.0
1,086,318	-		CCNA_01006	0.76	-0.8
1,086,318	-		CCNA_01006	0.76	+0.2
1,086,410	-				-0.7
1,086,495	-				+1.6
1,086,519	-		CCNA_01007	0.14	+0.9
1,086,536	+		CCNA_01007	0.24	-1.2
1,086,536	+		CCNA_01007	0.24	-1.8
1,086,536	+		CCNA_01007	0.24	-0.4
1,086,536	+		CCNA_01007	0.24	-0.9
1,086,540	+		CCNA_01007	0.26	-1.2
1,086,544	-		CCNA_01007	0.29	+0.8
1,086,544	-		CCNA_01007	0.29	+1.2
1,086,544	-		CCNA_01007	0.29	+0.6
1,086,550	+		CCNA_01007	0.32	-1.4
1,086,556	-		CCNA_01007	0.36	-0.0
1,086,608	-		CCNA_01007	0.67	+1.2