Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00186

Experiment: PYE with Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00185 and CCNA_R0003 are separated by 314 nucleotidesCCNA_R0003 and CCNA_00186 are separated by 84 nucleotidesCCNA_00186 and CCNA_00187 overlap by 4 nucleotides CCNA_00185: CCNA_00185 - TonB-dependent receptor, at 197,285 to 199,810 _00185 CCNA_R0003: CCNA_R0003 - tRNA-Arg, at 200,125 to 200,201 _R0003 CCNA_00186: CCNA_00186 - guanine-hypoxanthine permease, at 200,286 to 201,602 _00186 CCNA_00187: CCNA_00187 - NUP-family purine nucleoside permease, at 201,599 to 202,681 _00187 Position (kb) 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 199.301 kb on + strand, within CCNA_00185at 199.309 kb on - strand, within CCNA_00185at 199.314 kb on + strand, within CCNA_00185at 199.363 kb on + strand, within CCNA_00185at 199.371 kb on - strand, within CCNA_00185at 199.387 kb on - strand, within CCNA_00185at 199.391 kb on + strand, within CCNA_00185at 199.402 kb on + strand, within CCNA_00185at 199.402 kb on + strand, within CCNA_00185at 199.440 kb on + strand, within CCNA_00185at 199.461 kb on - strand, within CCNA_00185at 199.482 kb on + strand, within CCNA_00185at 199.492 kb on + strand, within CCNA_00185at 199.495 kb on - strand, within CCNA_00185at 199.500 kb on - strand, within CCNA_00185at 199.523 kb on - strand, within CCNA_00185at 199.554 kb on + strand, within CCNA_00185at 199.554 kb on + strand, within CCNA_00185at 199.554 kb on + strand, within CCNA_00185at 199.554 kb on + strand, within CCNA_00185at 199.583 kb on - strandat 199.588 kb on - strandat 199.612 kb on - strandat 199.617 kb on - strandat 199.617 kb on - strandat 199.663 kb on - strandat 199.665 kb on + strandat 199.673 kb on - strandat 199.673 kb on - strandat 199.685 kb on + strandat 199.707 kb on + strandat 199.715 kb on - strandat 199.727 kb on + strandat 199.746 kb on + strandat 199.746 kb on + strandat 199.746 kb on + strandat 199.746 kb on + strandat 199.764 kb on - strandat 199.766 kb on - strandat 199.861 kb on - strandat 199.902 kb on + strandat 199.907 kb on + strandat 199.910 kb on - strandat 199.915 kb on - strandat 199.970 kb on - strandat 199.982 kb on - strandat 199.985 kb on + strandat 199.993 kb on - strandat 200.054 kb on + strandat 200.084 kb on + strandat 200.084 kb on + strandat 200.084 kb on + strandat 200.084 kb on + strandat 200.084 kb on + strandat 200.084 kb on + strandat 200.092 kb on - strandat 200.092 kb on - strandat 200.092 kb on - strandat 200.097 kb on - strandat 200.283 kb on + strandat 200.378 kb on + strandat 200.383 kb on - strandat 200.387 kb on - strandat 200.409 kb on + strandat 200.441 kb on - strand, within CCNA_00186at 200.441 kb on - strand, within CCNA_00186at 200.477 kb on + strand, within CCNA_00186at 200.480 kb on - strand, within CCNA_00186at 200.568 kb on + strand, within CCNA_00186at 200.568 kb on + strand, within CCNA_00186at 200.569 kb on + strand, within CCNA_00186at 200.576 kb on - strand, within CCNA_00186at 200.576 kb on - strand, within CCNA_00186at 200.577 kb on - strand, within CCNA_00186at 200.577 kb on - strand, within CCNA_00186at 200.578 kb on - strand, within CCNA_00186at 200.607 kb on - strand, within CCNA_00186at 200.628 kb on + strand, within CCNA_00186at 200.628 kb on + strand, within CCNA_00186at 200.636 kb on - strand, within CCNA_00186at 200.636 kb on - strand, within CCNA_00186at 200.636 kb on - strand, within CCNA_00186at 200.636 kb on - strand, within CCNA_00186at 200.647 kb on + strand, within CCNA_00186at 200.665 kb on - strand, within CCNA_00186at 200.672 kb on + strand, within CCNA_00186at 200.679 kb on + strand, within CCNA_00186at 200.737 kb on + strand, within CCNA_00186at 200.753 kb on + strand, within CCNA_00186at 200.756 kb on - strand, within CCNA_00186at 200.759 kb on + strand, within CCNA_00186at 200.767 kb on - strand, within CCNA_00186at 200.767 kb on - strand, within CCNA_00186at 200.767 kb on - strand, within CCNA_00186at 200.767 kb on - strand, within CCNA_00186at 200.767 kb on - strand, within CCNA_00186at 200.829 kb on - strand, within CCNA_00186at 200.831 kb on + strand, within CCNA_00186at 200.931 kb on + strand, within CCNA_00186at 200.949 kb on + strand, within CCNA_00186at 200.973 kb on - strand, within CCNA_00186at 200.991 kb on - strand, within CCNA_00186at 201.020 kb on + strand, within CCNA_00186at 201.036 kb on - strand, within CCNA_00186at 201.055 kb on + strand, within CCNA_00186at 201.094 kb on + strand, within CCNA_00186at 201.096 kb on - strand, within CCNA_00186at 201.107 kb on - strand, within CCNA_00186at 201.151 kb on + strand, within CCNA_00186at 201.165 kb on + strand, within CCNA_00186at 201.196 kb on - strand, within CCNA_00186at 201.202 kb on + strand, within CCNA_00186at 201.202 kb on + strand, within CCNA_00186at 201.210 kb on - strand, within CCNA_00186at 201.210 kb on - strand, within CCNA_00186at 201.210 kb on - strand, within CCNA_00186at 201.210 kb on - strand, within CCNA_00186at 201.221 kb on + strand, within CCNA_00186at 201.287 kb on + strand, within CCNA_00186at 201.288 kb on - strand, within CCNA_00186at 201.297 kb on + strand, within CCNA_00186at 201.305 kb on - strand, within CCNA_00186at 201.305 kb on - strand, within CCNA_00186at 201.305 kb on - strand, within CCNA_00186at 201.315 kb on - strand, within CCNA_00186at 201.318 kb on - strand, within CCNA_00186at 201.322 kb on + strand, within CCNA_00186at 201.322 kb on + strand, within CCNA_00186at 201.323 kb on - strand, within CCNA_00186at 201.328 kb on + strand, within CCNA_00186at 201.328 kb on + strand, within CCNA_00186at 201.328 kb on + strand, within CCNA_00186at 201.328 kb on + strand, within CCNA_00186at 201.329 kb on - strand, within CCNA_00186at 201.330 kb on - strand, within CCNA_00186at 201.345 kb on + strand, within CCNA_00186at 201.374 kb on + strand, within CCNA_00186at 201.420 kb on + strand, within CCNA_00186at 201.420 kb on + strand, within CCNA_00186at 201.420 kb on + strand, within CCNA_00186at 201.420 kb on + strand, within CCNA_00186at 201.425 kb on + strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.428 kb on - strand, within CCNA_00186at 201.449 kb on - strand, within CCNA_00186at 201.479 kb on + strandat 201.480 kb on + strandat 201.516 kb on - strandat 201.519 kb on + strandat 201.519 kb on + strandat 201.529 kb on + strandat 201.560 kb on + strandat 201.581 kb on + strandat 201.636 kb on + strandat 201.644 kb on - strandat 201.644 kb on - strandat 201.687 kb on - strandat 201.690 kb on - strandat 201.741 kb on + strand, within CCNA_00187at 201.836 kb on + strand, within CCNA_00187at 201.836 kb on + strand, within CCNA_00187at 201.840 kb on - strand, within CCNA_00187at 201.853 kb on + strand, within CCNA_00187at 201.853 kb on + strand, within CCNA_00187at 201.853 kb on + strand, within CCNA_00187at 201.861 kb on - strandat 201.861 kb on - strand, within CCNA_00187at 201.863 kb on + strand, within CCNA_00187at 201.863 kb on + strand, within CCNA_00187at 201.868 kb on + strand, within CCNA_00187at 201.871 kb on - strand, within CCNA_00187at 201.895 kb on + strand, within CCNA_00187at 201.903 kb on - strand, within CCNA_00187at 201.909 kb on + strand, within CCNA_00187at 201.909 kb on + strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.921 kb on + strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.946 kb on + strand, within CCNA_00187at 201.954 kb on - strand, within CCNA_00187at 201.957 kb on + strand, within CCNA_00187at 201.957 kb on + strand, within CCNA_00187at 201.965 kb on - strand, within CCNA_00187at 201.965 kb on - strand, within CCNA_00187at 202.014 kb on + strand, within CCNA_00187at 202.014 kb on + strand, within CCNA_00187at 202.036 kb on - strand, within CCNA_00187at 202.054 kb on + strand, within CCNA_00187at 202.079 kb on - strand, within CCNA_00187at 202.099 kb on - strand, within CCNA_00187at 202.125 kb on + strand, within CCNA_00187at 202.132 kb on - strand, within CCNA_00187at 202.133 kb on - strand, within CCNA_00187at 202.135 kb on + strand, within CCNA_00187at 202.138 kb on - strand, within CCNA_00187at 202.143 kb on - strand, within CCNA_00187at 202.143 kb on - strand, within CCNA_00187at 202.153 kb on - strand, within CCNA_00187at 202.158 kb on + strand, within CCNA_00187at 202.179 kb on + strand, within CCNA_00187at 202.346 kb on - strand, within CCNA_00187at 202.349 kb on + strand, within CCNA_00187at 202.357 kb on - strand, within CCNA_00187at 202.390 kb on - strand, within CCNA_00187at 202.390 kb on - strand, within CCNA_00187at 202.438 kb on - strand, within CCNA_00187at 202.508 kb on + strand, within CCNA_00187at 202.511 kb on - strand, within CCNA_00187at 202.540 kb on - strand, within CCNA_00187at 202.557 kb on - strand, within CCNA_00187at 202.559 kb on + strand, within CCNA_00187at 202.581 kb on + strandat 202.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.0025 mg/ml
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199,301 + CCNA_00185 0.80 -2.0
199,309 - CCNA_00185 0.80 -1.7
199,314 + CCNA_00185 0.80 -0.7
199,363 + CCNA_00185 0.82 -1.4
199,371 - CCNA_00185 0.83 -1.5
199,387 - CCNA_00185 0.83 -0.4
199,391 + CCNA_00185 0.83 -1.5
199,402 + CCNA_00185 0.84 -2.0
199,402 + CCNA_00185 0.84 -0.8
199,440 + CCNA_00185 0.85 +0.0
199,461 - CCNA_00185 0.86 -2.0
199,482 + CCNA_00185 0.87 -2.7
199,492 + CCNA_00185 0.87 +0.8
199,495 - CCNA_00185 0.87 -0.7
199,500 - CCNA_00185 0.88 -0.9
199,523 - CCNA_00185 0.89 -0.4
199,554 + CCNA_00185 0.90 -1.2
199,554 + CCNA_00185 0.90 +2.6
199,554 + CCNA_00185 0.90 -0.0
199,554 + CCNA_00185 0.90 +1.4
199,583 - -0.7
199,588 - -0.6
199,612 - -0.3
199,617 - -0.2
199,617 - -0.5
199,663 - -0.2
199,665 + -0.2
199,673 - -0.8
199,673 - -0.1
199,685 + -2.0
199,707 + -3.2
199,715 - -1.0
199,727 + +0.5
199,746 + +0.7
199,746 + -1.2
199,746 + -1.4
199,746 + -0.7
199,764 - -0.5
199,766 - +1.3
199,861 - -0.9
199,902 + -1.1
199,907 + -1.5
199,910 - -0.6
199,915 - -1.0
199,970 - -2.4
199,982 - -1.3
199,985 + -0.4
199,993 - +0.3
200,054 + -0.2
200,084 + -2.3
200,084 + -1.4
200,084 + +1.0
200,084 + -1.5
200,084 + -1.1
200,084 + -1.5
200,092 - -0.2
200,092 - +0.0
200,092 - +0.4
200,097 - +0.6
200,283 + -0.6
200,378 + -0.9
200,383 - -0.4
200,387 - +0.1
200,409 + -0.2
200,441 - CCNA_00186 0.12 +0.9
200,441 - CCNA_00186 0.12 -0.7
200,477 + CCNA_00186 0.15 -0.2
200,480 - CCNA_00186 0.15 -1.4
200,568 + CCNA_00186 0.21 -1.1
200,568 + CCNA_00186 0.21 +0.1
200,569 + CCNA_00186 0.21 -0.8
200,576 - CCNA_00186 0.22 -0.4
200,576 - CCNA_00186 0.22 +0.1
200,577 - CCNA_00186 0.22 +1.0
200,577 - CCNA_00186 0.22 -0.7
200,578 - CCNA_00186 0.22 +0.3
200,607 - CCNA_00186 0.24 +0.1
200,628 + CCNA_00186 0.26 +0.1
200,628 + CCNA_00186 0.26 +1.0
200,636 - CCNA_00186 0.27 -0.9
200,636 - CCNA_00186 0.27 +1.8
200,636 - CCNA_00186 0.27 -0.5
200,636 - CCNA_00186 0.27 +0.4
200,647 + CCNA_00186 0.27 -0.8
200,665 - CCNA_00186 0.29 +0.7
200,672 + CCNA_00186 0.29 -1.5
200,679 + CCNA_00186 0.30 -1.5
200,737 + CCNA_00186 0.34 -0.9
200,753 + CCNA_00186 0.35 -0.6
200,756 - CCNA_00186 0.36 -0.0
200,759 + CCNA_00186 0.36 -1.5
200,767 - CCNA_00186 0.37 +0.0
200,767 - CCNA_00186 0.37 -0.7
200,767 - CCNA_00186 0.37 -0.3
200,767 - CCNA_00186 0.37 +0.5
200,767 - CCNA_00186 0.37 -0.8
200,829 - CCNA_00186 0.41 +0.2
200,831 + CCNA_00186 0.41 -1.6
200,931 + CCNA_00186 0.49 +0.5
200,949 + CCNA_00186 0.50 -0.1
200,973 - CCNA_00186 0.52 -1.8
200,991 - CCNA_00186 0.54 +0.4
201,020 + CCNA_00186 0.56 +0.8
201,036 - CCNA_00186 0.57 -0.6
201,055 + CCNA_00186 0.58 -0.2
201,094 + CCNA_00186 0.61 +1.9
201,096 - CCNA_00186 0.62 +0.2
201,107 - CCNA_00186 0.62 -0.3
201,151 + CCNA_00186 0.66 -0.9
201,165 + CCNA_00186 0.67 +0.7
201,196 - CCNA_00186 0.69 -0.2
201,202 + CCNA_00186 0.70 -2.0
201,202 + CCNA_00186 0.70 -1.3
201,210 - CCNA_00186 0.70 -0.4
201,210 - CCNA_00186 0.70 -1.4
201,210 - CCNA_00186 0.70 +1.1
201,210 - CCNA_00186 0.70 -1.6
201,221 + CCNA_00186 0.71 +0.0
201,287 + CCNA_00186 0.76 -1.3
201,288 - CCNA_00186 0.76 -0.3
201,297 + CCNA_00186 0.77 -0.2
201,305 - CCNA_00186 0.77 -1.2
201,305 - CCNA_00186 0.77 -1.8
201,305 - CCNA_00186 0.77 -0.5
201,315 - CCNA_00186 0.78 +0.4
201,318 - CCNA_00186 0.78 -0.0
201,322 + CCNA_00186 0.79 -0.8
201,322 + CCNA_00186 0.79 -1.0
201,323 - CCNA_00186 0.79 +0.1
201,328 + CCNA_00186 0.79 -1.8
201,328 + CCNA_00186 0.79 -0.9
201,328 + CCNA_00186 0.79 -0.2
201,328 + CCNA_00186 0.79 -1.6
201,329 - CCNA_00186 0.79 -1.7
201,330 - CCNA_00186 0.79 +0.6
201,345 + CCNA_00186 0.80 +0.0
201,374 + CCNA_00186 0.83 -0.7
201,420 + CCNA_00186 0.86 -0.6
201,420 + CCNA_00186 0.86 -0.6
201,420 + CCNA_00186 0.86 -0.4
201,420 + CCNA_00186 0.86 -0.9
201,425 + CCNA_00186 0.86 -1.2
201,428 - CCNA_00186 0.87 -1.4
201,428 - CCNA_00186 0.87 -1.0
201,428 - CCNA_00186 0.87 +0.4
201,428 - CCNA_00186 0.87 +0.9
201,428 - CCNA_00186 0.87 -0.1
201,428 - CCNA_00186 0.87 -0.6
201,428 - CCNA_00186 0.87 -0.3
201,449 - CCNA_00186 0.88 -0.4
201,479 + -1.7
201,480 + -2.0
201,516 - -0.7
201,519 + +0.6
201,519 + -1.2
201,529 + -1.0
201,560 + -1.2
201,581 + -2.3
201,636 + -0.9
201,644 - +0.4
201,644 - -0.7
201,687 - +0.3
201,690 - -0.5
201,741 + CCNA_00187 0.13 -0.9
201,836 + CCNA_00187 0.22 -0.8
201,836 + CCNA_00187 0.22 -0.9
201,840 - CCNA_00187 0.22 -1.2
201,853 + CCNA_00187 0.23 -2.0
201,853 + CCNA_00187 0.23 -1.2
201,853 + CCNA_00187 0.23 -0.9
201,861 - +0.0
201,861 - CCNA_00187 0.24 -1.9
201,863 + CCNA_00187 0.24 -2.0
201,863 + CCNA_00187 0.24 -1.5
201,868 + CCNA_00187 0.25 +1.1
201,871 - CCNA_00187 0.25 +1.1
201,895 + CCNA_00187 0.27 -0.6
201,903 - CCNA_00187 0.28 -1.0
201,909 + CCNA_00187 0.29 +0.5
201,909 + CCNA_00187 0.29 -1.2
201,917 - CCNA_00187 0.29 +0.0
201,917 - CCNA_00187 0.29 +0.5
201,917 - CCNA_00187 0.29 -0.9
201,917 - CCNA_00187 0.29 -0.5
201,921 + CCNA_00187 0.30 +0.8
201,929 - CCNA_00187 0.30 -0.7
201,929 - CCNA_00187 0.30 -1.3
201,929 - CCNA_00187 0.30 -0.2
201,929 - CCNA_00187 0.30 +1.0
201,946 + CCNA_00187 0.32 +0.3
201,954 - CCNA_00187 0.33 -0.2
201,957 + CCNA_00187 0.33 +0.1
201,957 + CCNA_00187 0.33 -0.1
201,965 - CCNA_00187 0.34 -1.0
201,965 - CCNA_00187 0.34 +0.0
202,014 + CCNA_00187 0.38 -0.4
202,014 + CCNA_00187 0.38 -1.1
202,036 - CCNA_00187 0.40 +0.2
202,054 + CCNA_00187 0.42 -1.9
202,079 - CCNA_00187 0.44 +0.3
202,099 - CCNA_00187 0.46 +0.4
202,125 + CCNA_00187 0.49 -0.4
202,132 - CCNA_00187 0.49 -0.0
202,133 - CCNA_00187 0.49 -0.3
202,135 + CCNA_00187 0.49 -0.3
202,138 - CCNA_00187 0.50 +0.5
202,143 - CCNA_00187 0.50 -0.4
202,143 - CCNA_00187 0.50 +0.1
202,153 - CCNA_00187 0.51 +0.0
202,158 + CCNA_00187 0.52 -0.7
202,179 + CCNA_00187 0.54 -1.1
202,346 - CCNA_00187 0.69 +0.5
202,349 + CCNA_00187 0.69 -2.0
202,357 - CCNA_00187 0.70 +0.1
202,390 - CCNA_00187 0.73 -0.4
202,390 - CCNA_00187 0.73 -1.1
202,438 - CCNA_00187 0.77 -2.2
202,508 + CCNA_00187 0.84 -2.2
202,511 - CCNA_00187 0.84 -0.6
202,540 - CCNA_00187 0.87 -0.6
202,557 - CCNA_00187 0.88 +0.7
202,559 + CCNA_00187 0.89 -0.4
202,581 + +1.0
202,591 - +0.1

Or see this region's nucleotide sequence