Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22200

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22195 and ABZR87_RS22200 overlap by 11 nucleotidesABZR87_RS22200 and ABZR87_RS22205 are separated by 68 nucleotidesABZR87_RS22205 and ABZR87_RS22210 overlap by 4 nucleotides ABZR87_RS22195: ABZR87_RS22195 - flagellar motor switch protein FliM, at 1,344,322 to 1,345,332 _RS22195 ABZR87_RS22200: ABZR87_RS22200 - flagellar motor switch protein FliN, at 1,345,322 to 1,345,789 _RS22200 ABZR87_RS22205: ABZR87_RS22205 - flagellar biosynthetic protein FliO, at 1,345,858 to 1,346,259 _RS22205 ABZR87_RS22210: ABZR87_RS22210 - flagellar type III secretion system pore protein FliP, at 1,346,256 to 1,347,005 _RS22210 Position (kb) 1345 1346Strain fitness (log2 ratio) -1 0 1 2 3at 1344.428 kb on + strand, within ABZR87_RS22195at 1344.428 kb on + strand, within ABZR87_RS22195at 1344.428 kb on + strand, within ABZR87_RS22195at 1344.428 kb on + strand, within ABZR87_RS22195at 1344.429 kb on - strand, within ABZR87_RS22195at 1344.429 kb on - strand, within ABZR87_RS22195at 1344.429 kb on - strand, within ABZR87_RS22195at 1344.436 kb on + strand, within ABZR87_RS22195at 1344.437 kb on - strand, within ABZR87_RS22195at 1344.437 kb on - strand, within ABZR87_RS22195at 1344.437 kb on - strand, within ABZR87_RS22195at 1344.437 kb on - strand, within ABZR87_RS22195at 1344.589 kb on + strand, within ABZR87_RS22195at 1344.589 kb on + strand, within ABZR87_RS22195at 1344.590 kb on - strand, within ABZR87_RS22195at 1344.762 kb on + strand, within ABZR87_RS22195at 1344.817 kb on + strand, within ABZR87_RS22195at 1344.818 kb on - strand, within ABZR87_RS22195at 1344.818 kb on - strand, within ABZR87_RS22195at 1344.841 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.969 kb on + strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.970 kb on - strand, within ABZR87_RS22195at 1344.982 kb on + strand, within ABZR87_RS22195at 1344.982 kb on + strand, within ABZR87_RS22195at 1345.208 kb on + strand, within ABZR87_RS22195at 1345.208 kb on + strand, within ABZR87_RS22195at 1345.209 kb on - strand, within ABZR87_RS22195at 1345.209 kb on - strand, within ABZR87_RS22195at 1345.237 kb on + strandat 1345.238 kb on - strandat 1345.258 kb on + strandat 1345.259 kb on - strandat 1345.259 kb on - strandat 1345.287 kb on + strandat 1345.288 kb on - strandat 1345.288 kb on - strandat 1345.685 kb on + strand, within ABZR87_RS22200at 1345.768 kb on + strandat 1345.768 kb on + strandat 1345.768 kb on + strandat 1345.774 kb on + strandat 1345.800 kb on + strandat 1345.801 kb on - strandat 1345.801 kb on - strandat 1345.890 kb on - strandat 1345.890 kb on - strandat 1345.890 kb on - strandat 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.268 kb on - strandat 1346.268 kb on - strandat 1346.268 kb on - strandat 1346.268 kb on - strandat 1346.379 kb on + strand, within ABZR87_RS22210at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.380 kb on - strand, within ABZR87_RS22210at 1346.380 kb on - strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.593 kb on - strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.605 kb on - strand, within ABZR87_RS22210

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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1,344,428 + ABZR87_RS22195 0.10 +1.2
1,344,428 + ABZR87_RS22195 0.10 +2.4
1,344,428 + ABZR87_RS22195 0.10 +1.5
1,344,428 + ABZR87_RS22195 0.10 +2.3
1,344,429 - ABZR87_RS22195 0.11 +2.0
1,344,429 - ABZR87_RS22195 0.11 +2.7
1,344,429 - ABZR87_RS22195 0.11 +2.2
1,344,436 + ABZR87_RS22195 0.11 +2.5
1,344,437 - ABZR87_RS22195 0.11 +2.2
1,344,437 - ABZR87_RS22195 0.11 +1.8
1,344,437 - ABZR87_RS22195 0.11 +2.8
1,344,437 - ABZR87_RS22195 0.11 +2.5
1,344,589 + ABZR87_RS22195 0.26 +2.4
1,344,589 + ABZR87_RS22195 0.26 +2.5
1,344,590 - ABZR87_RS22195 0.27 +2.3
1,344,762 + ABZR87_RS22195 0.44 +1.6
1,344,817 + ABZR87_RS22195 0.49 +2.1
1,344,818 - ABZR87_RS22195 0.49 +2.2
1,344,818 - ABZR87_RS22195 0.49 +1.8
1,344,841 + ABZR87_RS22195 0.51 +2.1
1,344,969 + ABZR87_RS22195 0.64 +2.7
1,344,969 + ABZR87_RS22195 0.64 +2.8
1,344,969 + ABZR87_RS22195 0.64 -0.4
1,344,969 + ABZR87_RS22195 0.64 +2.1
1,344,969 + ABZR87_RS22195 0.64 +2.8
1,344,969 + ABZR87_RS22195 0.64 +1.9
1,344,969 + ABZR87_RS22195 0.64 +2.3
1,344,970 - ABZR87_RS22195 0.64 +2.1
1,344,970 - ABZR87_RS22195 0.64 +2.1
1,344,970 - ABZR87_RS22195 0.64 +2.3
1,344,970 - ABZR87_RS22195 0.64 +2.6
1,344,970 - ABZR87_RS22195 0.64 +2.3
1,344,970 - ABZR87_RS22195 0.64 +1.2
1,344,970 - ABZR87_RS22195 0.64 +2.4
1,344,970 - ABZR87_RS22195 0.64 +2.3
1,344,982 + ABZR87_RS22195 0.65 +2.2
1,344,982 + ABZR87_RS22195 0.65 +2.3
1,345,208 + ABZR87_RS22195 0.88 +1.7
1,345,208 + ABZR87_RS22195 0.88 +1.8
1,345,209 - ABZR87_RS22195 0.88 +2.0
1,345,209 - ABZR87_RS22195 0.88 +2.4
1,345,237 + +1.4
1,345,238 - +2.1
1,345,258 + +2.1
1,345,259 - +2.6
1,345,259 - +2.1
1,345,287 + -1.7
1,345,288 - +2.0
1,345,288 - +2.2
1,345,685 + ABZR87_RS22200 0.78 +1.1
1,345,768 + +0.9
1,345,768 + -0.8
1,345,768 + -0.6
1,345,774 + -0.8
1,345,800 + -0.4
1,345,801 - +2.7
1,345,801 - +2.5
1,345,890 - +0.6
1,345,890 - +2.2
1,345,890 - +2.3
1,345,905 - ABZR87_RS22205 0.12 +2.2
1,345,905 - ABZR87_RS22205 0.12 +1.9
1,345,905 - ABZR87_RS22205 0.12 +2.7
1,345,905 - ABZR87_RS22205 0.12 +2.3
1,345,905 - ABZR87_RS22205 0.12 +2.1
1,346,267 + +2.2
1,346,267 + +0.9
1,346,267 + +2.3
1,346,267 + +2.2
1,346,267 + +1.6
1,346,267 + +1.6
1,346,268 - +1.9
1,346,268 - +3.0
1,346,268 - +2.6
1,346,268 - +2.4
1,346,379 + ABZR87_RS22210 0.16 +2.8
1,346,379 + ABZR87_RS22210 0.16 +2.0
1,346,379 + ABZR87_RS22210 0.16 +2.5
1,346,380 - ABZR87_RS22210 0.17 +2.3
1,346,380 - ABZR87_RS22210 0.17 +2.3
1,346,592 + ABZR87_RS22210 0.45 +2.8
1,346,592 + ABZR87_RS22210 0.45 +3.0
1,346,592 + ABZR87_RS22210 0.45 +2.5
1,346,593 - ABZR87_RS22210 0.45 +2.6
1,346,604 + ABZR87_RS22210 0.46 +2.6
1,346,604 + ABZR87_RS22210 0.46 +2.6
1,346,604 + ABZR87_RS22210 0.46 +2.6
1,346,605 - ABZR87_RS22210 0.47 +2.3

Or see this region's nucleotide sequence