Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22080

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22075 and ABZR87_RS22080 overlap by 4 nucleotidesABZR87_RS22080 and ABZR87_RS22085 are separated by 281 nucleotidesABZR87_RS22085 and ABZR87_RS22090 are separated by 37 nucleotides ABZR87_RS22075: ABZR87_RS22075 - flagellar motor switch protein FliG, at 1,321,311 to 1,322,303 _RS22075 ABZR87_RS22080: ABZR87_RS22080 - flagellar basal-body MS-ring/collar protein FliF, at 1,322,300 to 1,324,135 _RS22080 ABZR87_RS22085: ABZR87_RS22085 - flagellar hook-basal body complex protein FliE, at 1,324,417 to 1,324,758 _RS22085 ABZR87_RS22090: ABZR87_RS22090 - glycosyltransferase family 2 protein, at 1,324,796 to 1,325,905 _RS22090 Position (kb) 1322 1323 1324 1325Strain fitness (log2 ratio) -1 0 1 2 3 4at 1321.318 kb on + strandat 1321.318 kb on + strandat 1321.318 kb on + strandat 1321.319 kb on - strandat 1321.319 kb on - strandat 1321.352 kb on - strandat 1321.870 kb on + strand, within ABZR87_RS22075at 1321.870 kb on + strand, within ABZR87_RS22075at 1322.083 kb on + strand, within ABZR87_RS22075at 1322.083 kb on + strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.308 kb on + strandat 1322.637 kb on + strand, within ABZR87_RS22080at 1322.638 kb on - strand, within ABZR87_RS22080at 1322.638 kb on - strand, within ABZR87_RS22080at 1322.638 kb on - strand, within ABZR87_RS22080at 1322.658 kb on + strand, within ABZR87_RS22080at 1322.659 kb on - strand, within ABZR87_RS22080at 1322.853 kb on + strand, within ABZR87_RS22080at 1322.853 kb on + strand, within ABZR87_RS22080at 1322.853 kb on + strand, within ABZR87_RS22080at 1322.854 kb on - strand, within ABZR87_RS22080at 1322.854 kb on - strand, within ABZR87_RS22080at 1322.885 kb on + strand, within ABZR87_RS22080at 1322.886 kb on - strand, within ABZR87_RS22080at 1322.886 kb on - strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.935 kb on - strand, within ABZR87_RS22080at 1322.935 kb on - strand, within ABZR87_RS22080at 1323.166 kb on + strand, within ABZR87_RS22080at 1323.213 kb on + strand, within ABZR87_RS22080at 1323.214 kb on - strand, within ABZR87_RS22080at 1323.261 kb on - strand, within ABZR87_RS22080at 1323.324 kb on + strand, within ABZR87_RS22080at 1323.324 kb on + strand, within ABZR87_RS22080at 1323.324 kb on + strand, within ABZR87_RS22080at 1323.325 kb on - strand, within ABZR87_RS22080at 1323.325 kb on - strand, within ABZR87_RS22080at 1323.325 kb on - strand, within ABZR87_RS22080at 1323.348 kb on + strand, within ABZR87_RS22080at 1323.348 kb on + strand, within ABZR87_RS22080at 1323.348 kb on + strand, within ABZR87_RS22080at 1323.348 kb on + strand, within ABZR87_RS22080at 1323.348 kb on + strand, within ABZR87_RS22080at 1323.349 kb on - strand, within ABZR87_RS22080at 1323.520 kb on - strand, within ABZR87_RS22080at 1323.520 kb on - strand, within ABZR87_RS22080at 1323.666 kb on + strand, within ABZR87_RS22080at 1323.666 kb on + strand, within ABZR87_RS22080at 1323.666 kb on + strand, within ABZR87_RS22080at 1323.667 kb on - strand, within ABZR87_RS22080at 1323.667 kb on - strand, within ABZR87_RS22080at 1323.694 kb on + strand, within ABZR87_RS22080at 1323.695 kb on - strand, within ABZR87_RS22080at 1323.897 kb on + strand, within ABZR87_RS22080at 1323.897 kb on + strand, within ABZR87_RS22080at 1323.898 kb on - strand, within ABZR87_RS22080at 1323.898 kb on - strand, within ABZR87_RS22080at 1323.898 kb on - strand, within ABZR87_RS22080at 1323.910 kb on - strand, within ABZR87_RS22080at 1324.081 kb on + strandat 1324.082 kb on - strandat 1324.155 kb on + strandat 1324.155 kb on + strandat 1324.155 kb on + strandat 1324.316 kb on + strandat 1324.391 kb on + strandat 1324.391 kb on + strandat 1324.391 kb on + strandat 1324.392 kb on - strandat 1324.422 kb on + strandat 1324.423 kb on - strandat 1324.425 kb on + strandat 1324.425 kb on + strandat 1324.425 kb on + strandat 1324.426 kb on - strandat 1324.426 kb on - strandat 1324.426 kb on - strandat 1324.426 kb on - strandat 1324.729 kb on + strandat 1324.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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1,321,318 + +3.2
1,321,318 + +2.5
1,321,318 + +2.3
1,321,319 - +1.9
1,321,319 - +0.8
1,321,352 - +1.5
1,321,870 + ABZR87_RS22075 0.56 +1.7
1,321,870 + ABZR87_RS22075 0.56 +2.3
1,322,083 + ABZR87_RS22075 0.78 +2.6
1,322,083 + ABZR87_RS22075 0.78 +2.2
1,322,084 - ABZR87_RS22075 0.78 +2.5
1,322,084 - ABZR87_RS22075 0.78 +1.8
1,322,084 - ABZR87_RS22075 0.78 +3.0
1,322,084 - ABZR87_RS22075 0.78 +2.3
1,322,308 + +2.6
1,322,637 + ABZR87_RS22080 0.18 +3.0
1,322,638 - ABZR87_RS22080 0.18 +2.7
1,322,638 - ABZR87_RS22080 0.18 +2.3
1,322,638 - ABZR87_RS22080 0.18 +2.6
1,322,658 + ABZR87_RS22080 0.19 +2.7
1,322,659 - ABZR87_RS22080 0.20 +3.0
1,322,853 + ABZR87_RS22080 0.30 +1.7
1,322,853 + ABZR87_RS22080 0.30 +2.2
1,322,853 + ABZR87_RS22080 0.30 +3.4
1,322,854 - ABZR87_RS22080 0.30 +2.7
1,322,854 - ABZR87_RS22080 0.30 +2.6
1,322,885 + ABZR87_RS22080 0.32 +2.7
1,322,886 - ABZR87_RS22080 0.32 +2.5
1,322,886 - ABZR87_RS22080 0.32 +2.9
1,322,934 + ABZR87_RS22080 0.35 +2.4
1,322,934 + ABZR87_RS22080 0.35 +2.5
1,322,934 + ABZR87_RS22080 0.35 +2.0
1,322,934 + ABZR87_RS22080 0.35 +2.1
1,322,935 - ABZR87_RS22080 0.35 +2.4
1,322,935 - ABZR87_RS22080 0.35 +4.3
1,323,166 + ABZR87_RS22080 0.47 +2.4
1,323,213 + ABZR87_RS22080 0.50 +2.4
1,323,214 - ABZR87_RS22080 0.50 +2.3
1,323,261 - ABZR87_RS22080 0.52 +2.4
1,323,324 + ABZR87_RS22080 0.56 +2.7
1,323,324 + ABZR87_RS22080 0.56 +2.6
1,323,324 + ABZR87_RS22080 0.56 +2.4
1,323,325 - ABZR87_RS22080 0.56 +3.0
1,323,325 - ABZR87_RS22080 0.56 +2.3
1,323,325 - ABZR87_RS22080 0.56 +2.4
1,323,348 + ABZR87_RS22080 0.57 +1.7
1,323,348 + ABZR87_RS22080 0.57 +3.5
1,323,348 + ABZR87_RS22080 0.57 +2.0
1,323,348 + ABZR87_RS22080 0.57 +2.1
1,323,348 + ABZR87_RS22080 0.57 +2.8
1,323,349 - ABZR87_RS22080 0.57 +2.0
1,323,520 - ABZR87_RS22080 0.66 +2.2
1,323,520 - ABZR87_RS22080 0.66 +2.8
1,323,666 + ABZR87_RS22080 0.74 +2.7
1,323,666 + ABZR87_RS22080 0.74 +2.4
1,323,666 + ABZR87_RS22080 0.74 +2.7
1,323,667 - ABZR87_RS22080 0.74 +3.2
1,323,667 - ABZR87_RS22080 0.74 +2.0
1,323,694 + ABZR87_RS22080 0.76 +2.6
1,323,695 - ABZR87_RS22080 0.76 +2.9
1,323,897 + ABZR87_RS22080 0.87 +2.2
1,323,897 + ABZR87_RS22080 0.87 +2.4
1,323,898 - ABZR87_RS22080 0.87 +1.8
1,323,898 - ABZR87_RS22080 0.87 +2.5
1,323,898 - ABZR87_RS22080 0.87 +1.9
1,323,910 - ABZR87_RS22080 0.88 +2.7
1,324,081 + +2.2
1,324,082 - +1.8
1,324,155 + +2.3
1,324,155 + +2.2
1,324,155 + +2.6
1,324,316 + +0.7
1,324,391 + +0.2
1,324,391 + -0.4
1,324,391 + +0.3
1,324,392 - +1.4
1,324,422 + +0.8
1,324,423 - +1.0
1,324,425 + +1.1
1,324,425 + -0.4
1,324,425 + -1.1
1,324,426 - +0.5
1,324,426 - +2.0
1,324,426 - +1.2
1,324,426 - -0.7
1,324,729 + -0.0
1,324,730 - +1.1

Or see this region's nucleotide sequence