Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18845

Experiment: soil sample 9; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18840 and ABZR87_RS18845 are separated by 15 nucleotidesABZR87_RS18845 and ABZR87_RS18850 are separated by 433 nucleotides ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838 _RS18840 ABZR87_RS18845: ABZR87_RS18845 - GbsR/MarR family transcriptional regulator, at 580,854 to 581,414 _RS18845 ABZR87_RS18850: ABZR87_RS18850 - PAS domain-containing methyl-accepting chemotaxis protein, at 581,848 to 583,392 _RS18850 Position (kb) 580 581 582Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 579.961 kb on + strand, within ABZR87_RS18840at 579.961 kb on + strand, within ABZR87_RS18840at 580.229 kb on - strand, within ABZR87_RS18840at 580.367 kb on - strand, within ABZR87_RS18840at 580.457 kb on + strand, within ABZR87_RS18840at 580.458 kb on - strand, within ABZR87_RS18840at 580.544 kb on - strand, within ABZR87_RS18840at 580.565 kb on + strand, within ABZR87_RS18840at 580.566 kb on - strand, within ABZR87_RS18840at 580.566 kb on - strand, within ABZR87_RS18840at 580.583 kb on + strand, within ABZR87_RS18840at 580.583 kb on + strand, within ABZR87_RS18840at 580.583 kb on + strand, within ABZR87_RS18840at 580.584 kb on - strand, within ABZR87_RS18840at 580.585 kb on + strand, within ABZR87_RS18840at 580.586 kb on - strand, within ABZR87_RS18840at 580.586 kb on - strand, within ABZR87_RS18840at 580.681 kb on + strand, within ABZR87_RS18840at 580.682 kb on - strand, within ABZR87_RS18840at 580.790 kb on + strandat 580.791 kb on - strandat 580.791 kb on - strandat 580.855 kb on + strandat 580.855 kb on + strandat 580.856 kb on - strandat 580.856 kb on - strandat 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 581.008 kb on + strand, within ABZR87_RS18845at 581.008 kb on + strand, within ABZR87_RS18845at 581.008 kb on + strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.323 kb on + strand, within ABZR87_RS18845at 581.324 kb on - strand, within ABZR87_RS18845at 581.456 kb on - strandat 581.533 kb on + strandat 581.533 kb on + strandat 581.534 kb on - strandat 581.534 kb on - strandat 581.534 kb on - strandat 581.575 kb on + strandat 581.685 kb on - strandat 581.685 kb on - strandat 581.691 kb on + strandat 581.691 kb on + strandat 581.691 kb on + strandat 581.692 kb on - strandat 581.789 kb on - strandat 581.869 kb on - strandat 581.881 kb on + strandat 581.932 kb on + strandat 581.932 kb on + strandat 581.932 kb on + strandat 581.932 kb on + strandat 581.932 kb on + strandat 581.932 kb on + strandat 581.933 kb on - strandat 581.933 kb on - strandat 581.933 kb on - strandat 581.933 kb on - strandat 581.933 kb on - strandat 581.941 kb on + strandat 581.941 kb on + strandat 581.942 kb on - strandat 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.007 kb on - strand, within ABZR87_RS18850at 582.028 kb on - strand, within ABZR87_RS18850at 582.028 kb on - strand, within ABZR87_RS18850at 582.051 kb on + strand, within ABZR87_RS18850at 582.051 kb on + strand, within ABZR87_RS18850at 582.051 kb on + strand, within ABZR87_RS18850at 582.051 kb on + strand, within ABZR87_RS18850at 582.052 kb on - strand, within ABZR87_RS18850at 582.124 kb on + strand, within ABZR87_RS18850at 582.125 kb on - strand, within ABZR87_RS18850at 582.125 kb on - strand, within ABZR87_RS18850at 582.125 kb on - strand, within ABZR87_RS18850at 582.159 kb on + strand, within ABZR87_RS18850at 582.178 kb on + strand, within ABZR87_RS18850at 582.178 kb on + strand, within ABZR87_RS18850at 582.178 kb on + strand, within ABZR87_RS18850at 582.179 kb on - strand, within ABZR87_RS18850at 582.179 kb on - strand, within ABZR87_RS18850at 582.179 kb on - strand, within ABZR87_RS18850at 582.179 kb on - strand, within ABZR87_RS18850at 582.179 kb on - strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.180 kb on + strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.181 kb on - strand, within ABZR87_RS18850at 582.235 kb on + strand, within ABZR87_RS18850at 582.235 kb on + strand, within ABZR87_RS18850at 582.235 kb on + strand, within ABZR87_RS18850at 582.235 kb on + strand, within ABZR87_RS18850at 582.236 kb on - strand, within ABZR87_RS18850at 582.236 kb on - strand, within ABZR87_RS18850at 582.236 kb on - strand, within ABZR87_RS18850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
remove
579,961 + ABZR87_RS18840 0.37 +0.3
579,961 + ABZR87_RS18840 0.37 -1.1
580,229 - ABZR87_RS18840 0.56 +0.3
580,367 - ABZR87_RS18840 0.66 -0.1
580,457 + ABZR87_RS18840 0.72 -0.5
580,458 - ABZR87_RS18840 0.73 -0.3
580,544 - ABZR87_RS18840 0.79 +0.0
580,565 + ABZR87_RS18840 0.80 -1.0
580,566 - ABZR87_RS18840 0.80 +0.5
580,566 - ABZR87_RS18840 0.80 -0.2
580,583 + ABZR87_RS18840 0.82 -1.4
580,583 + ABZR87_RS18840 0.82 -1.5
580,583 + ABZR87_RS18840 0.82 +0.5
580,584 - ABZR87_RS18840 0.82 +2.4
580,585 + ABZR87_RS18840 0.82 -0.9
580,586 - ABZR87_RS18840 0.82 +0.3
580,586 - ABZR87_RS18840 0.82 -0.0
580,681 + ABZR87_RS18840 0.89 -0.7
580,682 - ABZR87_RS18840 0.89 +0.4
580,790 + -0.4
580,791 - +1.1
580,791 - -1.2
580,855 + -0.0
580,855 + -1.2
580,856 - -0.3
580,856 - +0.1
580,910 + ABZR87_RS18845 0.10 -1.4
580,910 + ABZR87_RS18845 0.10 -0.1
580,910 + ABZR87_RS18845 0.10 -0.3
580,910 + ABZR87_RS18845 0.10 -0.9
580,910 + ABZR87_RS18845 0.10 -0.1
580,910 + ABZR87_RS18845 0.10 -1.5
580,910 + ABZR87_RS18845 0.10 -0.5
580,911 - ABZR87_RS18845 0.10 +0.1
580,911 - ABZR87_RS18845 0.10 -0.0
580,911 - ABZR87_RS18845 0.10 +0.6
580,911 - ABZR87_RS18845 0.10 -0.2
580,911 - ABZR87_RS18845 0.10 +0.5
581,008 + ABZR87_RS18845 0.27 -1.4
581,008 + ABZR87_RS18845 0.27 +0.1
581,008 + ABZR87_RS18845 0.27 -1.2
581,009 - ABZR87_RS18845 0.28 -0.0
581,009 - ABZR87_RS18845 0.28 +1.4
581,009 - ABZR87_RS18845 0.28 +0.2
581,009 - ABZR87_RS18845 0.28 +0.0
581,009 - ABZR87_RS18845 0.28 +0.7
581,323 + ABZR87_RS18845 0.84 -2.6
581,324 - ABZR87_RS18845 0.84 -0.3
581,456 - +1.0
581,533 + -2.5
581,533 + -0.8
581,534 - +0.3
581,534 - -0.4
581,534 - +0.7
581,575 + -0.7
581,685 - +0.3
581,685 - +1.1
581,691 + -2.5
581,691 + -0.6
581,691 + -1.8
581,692 - +1.8
581,789 - +0.8
581,869 - +2.5
581,881 + +2.4
581,932 + +3.1
581,932 + +2.9
581,932 + +2.0
581,932 + +2.9
581,932 + +3.0
581,932 + +1.6
581,933 - +2.4
581,933 - +2.5
581,933 - +2.7
581,933 - +2.4
581,933 - +2.9
581,941 + +2.6
581,941 + +2.4
581,942 - +3.2
582,007 - ABZR87_RS18850 0.10 +2.7
582,007 - ABZR87_RS18850 0.10 +2.8
582,007 - ABZR87_RS18850 0.10 +2.6
582,007 - ABZR87_RS18850 0.10 +1.8
582,007 - ABZR87_RS18850 0.10 +3.9
582,007 - ABZR87_RS18850 0.10 +2.8
582,007 - ABZR87_RS18850 0.10 +2.7
582,007 - ABZR87_RS18850 0.10 +2.1
582,028 - ABZR87_RS18850 0.12 +3.6
582,028 - ABZR87_RS18850 0.12 +2.8
582,051 + ABZR87_RS18850 0.13 +2.9
582,051 + ABZR87_RS18850 0.13 +3.2
582,051 + ABZR87_RS18850 0.13 +2.5
582,051 + ABZR87_RS18850 0.13 +2.9
582,052 - ABZR87_RS18850 0.13 +2.8
582,124 + ABZR87_RS18850 0.18 +3.2
582,125 - ABZR87_RS18850 0.18 +2.3
582,125 - ABZR87_RS18850 0.18 +2.1
582,125 - ABZR87_RS18850 0.18 +2.4
582,159 + ABZR87_RS18850 0.20 +5.6
582,178 + ABZR87_RS18850 0.21 +2.7
582,178 + ABZR87_RS18850 0.21 +2.9
582,178 + ABZR87_RS18850 0.21 +2.8
582,179 - ABZR87_RS18850 0.21 +2.9
582,179 - ABZR87_RS18850 0.21 +4.0
582,179 - ABZR87_RS18850 0.21 +2.3
582,179 - ABZR87_RS18850 0.21 +2.6
582,179 - ABZR87_RS18850 0.21 +2.7
582,180 + ABZR87_RS18850 0.21 +2.5
582,180 + ABZR87_RS18850 0.21 +2.6
582,180 + ABZR87_RS18850 0.21 +3.1
582,180 + ABZR87_RS18850 0.21 +2.8
582,180 + ABZR87_RS18850 0.21 +3.9
582,180 + ABZR87_RS18850 0.21 +2.9
582,180 + ABZR87_RS18850 0.21 +3.9
582,180 + ABZR87_RS18850 0.21 +2.7
582,181 - ABZR87_RS18850 0.22 +2.7
582,181 - ABZR87_RS18850 0.22 +2.5
582,181 - ABZR87_RS18850 0.22 +2.9
582,181 - ABZR87_RS18850 0.22 +2.6
582,181 - ABZR87_RS18850 0.22 +2.6
582,181 - ABZR87_RS18850 0.22 +2.7
582,181 - ABZR87_RS18850 0.22 +2.4
582,181 - ABZR87_RS18850 0.22 +3.7
582,235 + ABZR87_RS18850 0.25 +2.8
582,235 + ABZR87_RS18850 0.25 +2.0
582,235 + ABZR87_RS18850 0.25 +2.3
582,235 + ABZR87_RS18850 0.25 +2.9
582,236 - ABZR87_RS18850 0.25 +1.0
582,236 - ABZR87_RS18850 0.25 +2.5
582,236 - ABZR87_RS18850 0.25 +2.8

Or see this region's nucleotide sequence