Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18005

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotidesABZR87_RS18000 and ABZR87_RS18005 are separated by 75 nucleotidesABZR87_RS18005 and ABZR87_RS18010 overlap by 1 nucleotides ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189 _RS17995 ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857 _RS18000 ABZR87_RS18005: ABZR87_RS18005 - formylglycine-generating enzyme family protein, at 393,933 to 395,036 _RS18005 ABZR87_RS18010: ABZR87_RS18010 - arylsulfatase, at 395,036 to 397,009 _RS18010 Position (kb) 393 394 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 393.126 kb on + strand, within ABZR87_RS17995at 393.127 kb on - strand, within ABZR87_RS17995at 393.378 kb on + strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 394.168 kb on + strand, within ABZR87_RS18005at 394.169 kb on - strand, within ABZR87_RS18005at 394.169 kb on - strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.234 kb on + strand, within ABZR87_RS18005at 394.235 kb on - strand, within ABZR87_RS18005at 394.235 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.552 kb on + strand, within ABZR87_RS18005at 394.552 kb on + strand, within ABZR87_RS18005at 394.553 kb on - strand, within ABZR87_RS18005at 394.553 kb on - strand, within ABZR87_RS18005at 394.630 kb on + strand, within ABZR87_RS18005at 394.722 kb on - strand, within ABZR87_RS18005at 394.754 kb on - strand, within ABZR87_RS18005at 395.023 kb on - strandat 395.040 kb on + strandat 395.040 kb on + strandat 395.040 kb on + strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.066 kb on + strandat 395.067 kb on - strandat 395.088 kb on + strandat 395.088 kb on + strandat 395.088 kb on + strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.259 kb on + strand, within ABZR87_RS18010at 395.361 kb on + strand, within ABZR87_RS18010at 395.380 kb on - strand, within ABZR87_RS18010at 395.452 kb on + strand, within ABZR87_RS18010at 395.453 kb on - strand, within ABZR87_RS18010at 395.638 kb on - strand, within ABZR87_RS18010at 395.688 kb on + strand, within ABZR87_RS18010at 395.688 kb on + strand, within ABZR87_RS18010at 395.844 kb on + strand, within ABZR87_RS18010at 395.844 kb on + strand, within ABZR87_RS18010at 395.845 kb on - strand, within ABZR87_RS18010at 395.845 kb on - strand, within ABZR87_RS18010at 395.872 kb on - strand, within ABZR87_RS18010at 395.872 kb on - strand, within ABZR87_RS18010at 395.872 kb on - strand, within ABZR87_RS18010at 395.883 kb on + strand, within ABZR87_RS18010at 395.883 kb on + strand, within ABZR87_RS18010at 395.883 kb on + strand, within ABZR87_RS18010at 395.884 kb on - strand, within ABZR87_RS18010at 395.884 kb on - strand, within ABZR87_RS18010at 395.952 kb on + strand, within ABZR87_RS18010at 395.959 kb on + strand, within ABZR87_RS18010at 395.960 kb on - strand, within ABZR87_RS18010at 395.960 kb on - strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.962 kb on - strand, within ABZR87_RS18010at 395.995 kb on - strand, within ABZR87_RS18010

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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393,126 + ABZR87_RS17995 0.84 +1.4
393,127 - ABZR87_RS17995 0.84 +0.9
393,378 + ABZR87_RS18000 0.28 +1.3
393,379 - ABZR87_RS18000 0.28 +1.6
393,379 - ABZR87_RS18000 0.28 +0.0
393,379 - ABZR87_RS18000 0.28 +0.6
393,379 - ABZR87_RS18000 0.28 +1.6
394,168 + ABZR87_RS18005 0.21 -0.1
394,169 - ABZR87_RS18005 0.21 -0.2
394,169 - ABZR87_RS18005 0.21 -2.9
394,191 + ABZR87_RS18005 0.23 +0.8
394,191 + ABZR87_RS18005 0.23 -0.9
394,191 + ABZR87_RS18005 0.23 -0.0
394,210 + ABZR87_RS18005 0.25 +0.3
394,210 + ABZR87_RS18005 0.25 +0.0
394,210 + ABZR87_RS18005 0.25 -0.1
394,210 + ABZR87_RS18005 0.25 -0.0
394,210 + ABZR87_RS18005 0.25 -0.9
394,234 + ABZR87_RS18005 0.27 -1.1
394,235 - ABZR87_RS18005 0.27 -0.2
394,235 - ABZR87_RS18005 0.27 -0.0
394,307 - ABZR87_RS18005 0.34 -0.6
394,307 - ABZR87_RS18005 0.34 -0.3
394,307 - ABZR87_RS18005 0.34 -0.2
394,432 + ABZR87_RS18005 0.45 +0.4
394,432 + ABZR87_RS18005 0.45 -0.6
394,432 + ABZR87_RS18005 0.45 -0.5
394,552 + ABZR87_RS18005 0.56 +0.4
394,552 + ABZR87_RS18005 0.56 +0.3
394,553 - ABZR87_RS18005 0.56 -0.2
394,553 - ABZR87_RS18005 0.56 +0.2
394,630 + ABZR87_RS18005 0.63 -0.3
394,722 - ABZR87_RS18005 0.71 -0.3
394,754 - ABZR87_RS18005 0.74 -0.8
395,023 - +1.5
395,040 + +0.0
395,040 + +0.2
395,040 + +0.7
395,041 - -0.3
395,041 - -0.9
395,041 - -0.2
395,041 - -1.2
395,041 - -1.4
395,066 + -0.5
395,067 - +0.3
395,088 + -0.1
395,088 + -1.5
395,088 + +0.6
395,089 - -0.3
395,089 - -0.3
395,089 - +0.0
395,089 - +0.6
395,089 - +0.0
395,089 - -0.1
395,089 - +0.2
395,089 - -0.2
395,259 + ABZR87_RS18010 0.11 +0.5
395,361 + ABZR87_RS18010 0.16 +0.4
395,380 - ABZR87_RS18010 0.17 +0.3
395,452 + ABZR87_RS18010 0.21 -1.1
395,453 - ABZR87_RS18010 0.21 -1.0
395,638 - ABZR87_RS18010 0.30 -1.7
395,688 + ABZR87_RS18010 0.33 +2.2
395,688 + ABZR87_RS18010 0.33 -1.0
395,844 + ABZR87_RS18010 0.41 +0.1
395,844 + ABZR87_RS18010 0.41 +1.0
395,845 - ABZR87_RS18010 0.41 -0.5
395,845 - ABZR87_RS18010 0.41 -0.7
395,872 - ABZR87_RS18010 0.42 +0.4
395,872 - ABZR87_RS18010 0.42 +0.5
395,872 - ABZR87_RS18010 0.42 +0.0
395,883 + ABZR87_RS18010 0.43 -2.6
395,883 + ABZR87_RS18010 0.43 +1.7
395,883 + ABZR87_RS18010 0.43 +1.1
395,884 - ABZR87_RS18010 0.43 +0.2
395,884 - ABZR87_RS18010 0.43 -0.9
395,952 + ABZR87_RS18010 0.46 -0.2
395,959 + ABZR87_RS18010 0.47 +0.5
395,960 - ABZR87_RS18010 0.47 -1.4
395,960 - ABZR87_RS18010 0.47 +0.6
395,961 + ABZR87_RS18010 0.47 +0.5
395,961 + ABZR87_RS18010 0.47 -0.2
395,961 + ABZR87_RS18010 0.47 +0.0
395,961 + ABZR87_RS18010 0.47 +2.4
395,961 + ABZR87_RS18010 0.47 -0.4
395,962 - ABZR87_RS18010 0.47 +0.8
395,995 - ABZR87_RS18010 0.49 -0.3

Or see this region's nucleotide sequence