Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17895

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17885 and ABZR87_RS17890 are separated by 155 nucleotidesABZR87_RS17890 and ABZR87_RS17895 are separated by 259 nucleotidesABZR87_RS17895 and ABZR87_RS17900 overlap by 17 nucleotidesABZR87_RS17900 and ABZR87_RS17905 are separated by 27 nucleotides ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696 _RS17885 ABZR87_RS17890: ABZR87_RS17890 - FlxA-like family protein, at 370,852 to 371,364 _RS17890 ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445 _RS17895 ABZR87_RS17900: ABZR87_RS17900 - ABC transporter permease, at 372,429 to 373,259 _RS17900 ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291 _RS17905 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 370.972 kb on + strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.307 kb on + strand, within ABZR87_RS17890at 371.386 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.402 kb on - strandat 371.402 kb on - strandat 371.530 kb on + strandat 371.530 kb on + strandat 371.531 kb on - strandat 371.540 kb on - strandat 372.383 kb on + strandat 372.444 kb on - strandat 372.444 kb on - strandat 372.455 kb on + strandat 372.455 kb on + strandat 372.456 kb on - strandat 372.582 kb on + strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.901 kb on - strand, within ABZR87_RS17900at 372.901 kb on - strand, within ABZR87_RS17900at 372.901 kb on - strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 373.071 kb on + strand, within ABZR87_RS17900at 373.398 kb on + strand, within ABZR87_RS17905at 373.398 kb on + strand, within ABZR87_RS17905at 373.398 kb on + strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.415 kb on + strand, within ABZR87_RS17905at 373.416 kb on - strand, within ABZR87_RS17905

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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370,972 + ABZR87_RS17890 0.23 +0.7
370,973 - ABZR87_RS17890 0.24 +0.4
370,973 - ABZR87_RS17890 0.24 -0.2
371,028 + ABZR87_RS17890 0.34 -0.2
371,028 + ABZR87_RS17890 0.34 +0.0
371,029 - ABZR87_RS17890 0.35 -0.7
371,029 - ABZR87_RS17890 0.35 +0.3
371,029 - ABZR87_RS17890 0.35 -0.2
371,307 + ABZR87_RS17890 0.89 +0.0
371,386 + +0.0
371,401 + -0.0
371,401 + -1.5
371,401 + -0.4
371,402 - +0.4
371,402 - +0.1
371,530 + +0.7
371,530 + +0.3
371,531 - -1.6
371,540 - +0.3
372,383 + -1.5
372,444 - +2.7
372,444 - -0.1
372,455 + -0.3
372,455 + +0.5
372,456 - +1.4
372,582 + ABZR87_RS17900 0.18 -0.7
372,646 - ABZR87_RS17900 0.26 +1.0
372,646 - ABZR87_RS17900 0.26 -1.2
372,646 - ABZR87_RS17900 0.26 +0.1
372,646 - ABZR87_RS17900 0.26 -0.7
372,646 - ABZR87_RS17900 0.26 -1.1
372,646 - ABZR87_RS17900 0.26 -0.6
372,646 - ABZR87_RS17900 0.26 -0.3
372,896 + ABZR87_RS17900 0.56 -0.6
372,896 + ABZR87_RS17900 0.56 +2.2
372,896 + ABZR87_RS17900 0.56 +0.6
372,896 + ABZR87_RS17900 0.56 +1.0
372,897 - ABZR87_RS17900 0.56 +0.1
372,897 - ABZR87_RS17900 0.56 +0.4
372,897 - ABZR87_RS17900 0.56 +0.7
372,897 - ABZR87_RS17900 0.56 -0.1
372,897 - ABZR87_RS17900 0.56 -2.5
372,897 - ABZR87_RS17900 0.56 -1.5
372,900 + ABZR87_RS17900 0.57 +0.3
372,900 + ABZR87_RS17900 0.57 +0.6
372,900 + ABZR87_RS17900 0.57 +0.5
372,900 + ABZR87_RS17900 0.57 +0.9
372,901 - ABZR87_RS17900 0.57 -0.2
372,901 - ABZR87_RS17900 0.57 +0.4
372,901 - ABZR87_RS17900 0.57 +1.0
372,987 + ABZR87_RS17900 0.67 -1.0
372,987 + ABZR87_RS17900 0.67 -0.3
372,987 + ABZR87_RS17900 0.67 -0.2
372,987 + ABZR87_RS17900 0.67 +0.4
372,987 + ABZR87_RS17900 0.67 -0.3
372,987 + ABZR87_RS17900 0.67 +1.0
372,987 + ABZR87_RS17900 0.67 +0.5
372,987 + ABZR87_RS17900 0.67 +0.2
372,987 + ABZR87_RS17900 0.67 +0.3
372,987 + ABZR87_RS17900 0.67 -0.4
372,987 + ABZR87_RS17900 0.67 +1.3
372,987 + ABZR87_RS17900 0.67 -0.4
372,987 + ABZR87_RS17900 0.67 +0.7
372,987 + ABZR87_RS17900 0.67 -0.2
372,987 + ABZR87_RS17900 0.67 -0.4
372,987 + ABZR87_RS17900 0.67 -0.8
372,988 - ABZR87_RS17900 0.67 +0.2
372,988 - ABZR87_RS17900 0.67 +0.1
372,988 - ABZR87_RS17900 0.67 -0.4
372,988 - ABZR87_RS17900 0.67 +1.4
372,988 - ABZR87_RS17900 0.67 -0.1
373,071 + ABZR87_RS17900 0.77 +0.0
373,398 + ABZR87_RS17905 0.11 +0.0
373,398 + ABZR87_RS17905 0.11 +3.2
373,398 + ABZR87_RS17905 0.11 -0.2
373,399 - ABZR87_RS17905 0.11 -0.5
373,399 - ABZR87_RS17905 0.11 -0.0
373,399 - ABZR87_RS17905 0.11 +0.1
373,415 + ABZR87_RS17905 0.13 +0.9
373,416 - ABZR87_RS17905 0.13 -0.4

Or see this region's nucleotide sequence