Experiment: soil sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15495 and ABZR87_RS15500 overlap by 4 nucleotides ABZR87_RS15500 and ABZR87_RS15505 are separated by 83 nucleotides
ABZR87_RS15495: ABZR87_RS15495 - O-antigen ligase family protein, at 3,261,428 to 3,262,708
_RS15495
ABZR87_RS15500: ABZR87_RS15500 - glycosyltransferase, at 3,262,705 to 3,263,772
_RS15500
ABZR87_RS15505: ABZR87_RS15505 - DNA polymerase III subunit alpha, at 3,263,856 to 3,267,374
_RS15505
Position (kb)
3262
3263
3264 Strain fitness (log2 ratio)
-1
0
1
2 at 3261.709 kb on - strand, within ABZR87_RS15495 at 3261.709 kb on - strand, within ABZR87_RS15495 at 3261.709 kb on - strand, within ABZR87_RS15495 at 3261.709 kb on - strand, within ABZR87_RS15495 at 3261.709 kb on - strand, within ABZR87_RS15495 at 3261.710 kb on + strand, within ABZR87_RS15495 at 3261.711 kb on - strand, within ABZR87_RS15495 at 3261.903 kb on + strand, within ABZR87_RS15495 at 3261.903 kb on + strand, within ABZR87_RS15495 at 3261.904 kb on - strand, within ABZR87_RS15495 at 3261.949 kb on + strand, within ABZR87_RS15495 at 3261.965 kb on + strand, within ABZR87_RS15495 at 3261.965 kb on + strand, within ABZR87_RS15495 at 3261.966 kb on - strand, within ABZR87_RS15495 at 3261.966 kb on - strand, within ABZR87_RS15495 at 3261.966 kb on - strand, within ABZR87_RS15495 at 3261.966 kb on - strand, within ABZR87_RS15495 at 3261.966 kb on - strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.098 kb on + strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.099 kb on - strand, within ABZR87_RS15495 at 3262.165 kb on + strand, within ABZR87_RS15495 at 3262.281 kb on + strand, within ABZR87_RS15495 at 3262.281 kb on + strand, within ABZR87_RS15495 at 3262.281 kb on + strand, within ABZR87_RS15495 at 3262.281 kb on + strand, within ABZR87_RS15495 at 3262.289 kb on + strand, within ABZR87_RS15495 at 3262.289 kb on + strand, within ABZR87_RS15495 at 3262.290 kb on - strand, within ABZR87_RS15495 at 3262.290 kb on - strand, within ABZR87_RS15495 at 3262.290 kb on - strand, within ABZR87_RS15495 at 3262.345 kb on + strand, within ABZR87_RS15495 at 3262.346 kb on - strand, within ABZR87_RS15495 at 3262.346 kb on - strand, within ABZR87_RS15495 at 3262.776 kb on - strand at 3262.884 kb on + strand, within ABZR87_RS15500 at 3262.923 kb on + strand, within ABZR87_RS15500 at 3262.924 kb on - strand, within ABZR87_RS15500 at 3262.992 kb on - strand, within ABZR87_RS15500 at 3263.299 kb on + strand, within ABZR87_RS15500 at 3263.300 kb on - strand, within ABZR87_RS15500 at 3263.321 kb on + strand, within ABZR87_RS15500 at 3263.322 kb on - strand, within ABZR87_RS15500 at 3263.324 kb on + strand, within ABZR87_RS15500 at 3263.384 kb on + strand, within ABZR87_RS15500 at 3263.385 kb on - strand, within ABZR87_RS15500 at 3263.385 kb on - strand, within ABZR87_RS15500 at 3263.385 kb on - strand, within ABZR87_RS15500 at 3263.453 kb on + strand, within ABZR87_RS15500 at 3263.466 kb on + strand, within ABZR87_RS15500 at 3263.478 kb on + strand, within ABZR87_RS15500 at 3263.478 kb on + strand, within ABZR87_RS15500 at 3263.478 kb on + strand, within ABZR87_RS15500 at 3263.478 kb on + strand, within ABZR87_RS15500 at 3263.478 kb on + strand, within ABZR87_RS15500 at 3263.479 kb on - strand, within ABZR87_RS15500 at 3263.546 kb on + strand, within ABZR87_RS15500 at 3263.739 kb on - strand at 3263.781 kb on + strand at 3263.781 kb on + strand at 3263.781 kb on + strand at 3263.782 kb on - strand at 3263.787 kb on + strand at 3263.787 kb on + strand at 3263.793 kb on + strand at 3263.794 kb on - strand at 3263.857 kb on + strand at 3263.858 kb on - strand at 3263.858 kb on - strand at 3263.858 kb on - strand at 3263.858 kb on - strand at 3263.863 kb on + strand at 3263.863 kb on + strand at 3263.864 kb on - strand at 3263.864 kb on - strand at 3263.864 kb on - strand at 3264.363 kb on - strand, within ABZR87_RS15505
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB remove 3,261,709 - ABZR87_RS15495 0.22 +1.0 3,261,709 - ABZR87_RS15495 0.22 +1.7 3,261,709 - ABZR87_RS15495 0.22 +0.5 3,261,709 - ABZR87_RS15495 0.22 +1.2 3,261,709 - ABZR87_RS15495 0.22 +0.2 3,261,710 + ABZR87_RS15495 0.22 +1.7 3,261,711 - ABZR87_RS15495 0.22 +1.0 3,261,903 + ABZR87_RS15495 0.37 +0.4 3,261,903 + ABZR87_RS15495 0.37 +0.6 3,261,904 - ABZR87_RS15495 0.37 +0.6 3,261,949 + ABZR87_RS15495 0.41 +1.0 3,261,965 + ABZR87_RS15495 0.42 +0.8 3,261,965 + ABZR87_RS15495 0.42 +1.8 3,261,966 - ABZR87_RS15495 0.42 +1.1 3,261,966 - ABZR87_RS15495 0.42 +0.8 3,261,966 - ABZR87_RS15495 0.42 +0.7 3,261,966 - ABZR87_RS15495 0.42 +0.4 3,261,966 - ABZR87_RS15495 0.42 -0.9 3,262,098 + ABZR87_RS15495 0.52 +0.2 3,262,098 + ABZR87_RS15495 0.52 -0.4 3,262,098 + ABZR87_RS15495 0.52 +0.3 3,262,098 + ABZR87_RS15495 0.52 +0.8 3,262,098 + ABZR87_RS15495 0.52 +0.8 3,262,098 + ABZR87_RS15495 0.52 -0.2 3,262,098 + ABZR87_RS15495 0.52 -0.1 3,262,099 - ABZR87_RS15495 0.52 -0.7 3,262,099 - ABZR87_RS15495 0.52 +0.8 3,262,099 - ABZR87_RS15495 0.52 +0.8 3,262,099 - ABZR87_RS15495 0.52 +0.8 3,262,099 - ABZR87_RS15495 0.52 +1.2 3,262,099 - ABZR87_RS15495 0.52 +0.4 3,262,099 - ABZR87_RS15495 0.52 +1.7 3,262,099 - ABZR87_RS15495 0.52 -0.3 3,262,099 - ABZR87_RS15495 0.52 +1.4 3,262,165 + ABZR87_RS15495 0.58 -0.3 3,262,281 + ABZR87_RS15495 0.67 +1.4 3,262,281 + ABZR87_RS15495 0.67 +1.4 3,262,281 + ABZR87_RS15495 0.67 +0.6 3,262,281 + ABZR87_RS15495 0.67 +0.6 3,262,289 + ABZR87_RS15495 0.67 +0.6 3,262,289 + ABZR87_RS15495 0.67 +0.5 3,262,290 - ABZR87_RS15495 0.67 -0.8 3,262,290 - ABZR87_RS15495 0.67 +0.2 3,262,290 - ABZR87_RS15495 0.67 +0.6 3,262,345 + ABZR87_RS15495 0.72 +0.4 3,262,346 - ABZR87_RS15495 0.72 +0.7 3,262,346 - ABZR87_RS15495 0.72 +1.2 3,262,776 - +1.5 3,262,884 + ABZR87_RS15500 0.17 +1.5 3,262,923 + ABZR87_RS15500 0.20 +2.5 3,262,924 - ABZR87_RS15500 0.21 +0.8 3,262,992 - ABZR87_RS15500 0.27 +1.3 3,263,299 + ABZR87_RS15500 0.56 +0.3 3,263,300 - ABZR87_RS15500 0.56 +1.8 3,263,321 + ABZR87_RS15500 0.58 +1.6 3,263,322 - ABZR87_RS15500 0.58 +1.5 3,263,324 + ABZR87_RS15500 0.58 +1.1 3,263,384 + ABZR87_RS15500 0.64 -0.1 3,263,385 - ABZR87_RS15500 0.64 +2.0 3,263,385 - ABZR87_RS15500 0.64 +1.3 3,263,385 - ABZR87_RS15500 0.64 +1.2 3,263,453 + ABZR87_RS15500 0.70 +0.8 3,263,466 + ABZR87_RS15500 0.71 +2.5 3,263,478 + ABZR87_RS15500 0.72 +1.0 3,263,478 + ABZR87_RS15500 0.72 +1.2 3,263,478 + ABZR87_RS15500 0.72 +0.5 3,263,478 + ABZR87_RS15500 0.72 +0.3 3,263,478 + ABZR87_RS15500 0.72 +1.6 3,263,479 - ABZR87_RS15500 0.72 +1.7 3,263,546 + ABZR87_RS15500 0.79 +1.8 3,263,739 - +0.8 3,263,781 + -0.5 3,263,781 + -0.0 3,263,781 + -0.6 3,263,782 - +0.9 3,263,787 + +0.5 3,263,787 + -1.4 3,263,793 + +0.8 3,263,794 - +0.6 3,263,857 + +0.3 3,263,858 - -0.1 3,263,858 - +0.0 3,263,858 - +0.7 3,263,858 - +0.4 3,263,863 + -0.8 3,263,863 + -0.7 3,263,864 - -0.9 3,263,864 - +0.0 3,263,864 - +0.6 3,264,363 - ABZR87_RS15505 0.14 -0.7
Or see this region's nucleotide sequence