Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12120

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12115 and ABZR87_RS12120 are separated by 77 nucleotidesABZR87_RS12120 and ABZR87_RS12125 are separated by 23 nucleotidesABZR87_RS12125 and ABZR87_RS12130 are separated by 9 nucleotides ABZR87_RS12115: ABZR87_RS12115 - MFS transporter, at 2,570,240 to 2,571,406 _RS12115 ABZR87_RS12120: ABZR87_RS12120 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 2,571,484 to 2,572,311 _RS12120 ABZR87_RS12125: ABZR87_RS12125 - DsbA family protein, at 2,572,335 to 2,572,505 _RS12125 ABZR87_RS12130: ABZR87_RS12130 - LysR substrate-binding domain-containing protein, at 2,572,515 to 2,573,432 _RS12130 Position (kb) 2571 2572 2573Strain fitness (log2 ratio) -2 -1 0 1 2at 2570.647 kb on - strand, within ABZR87_RS12115at 2570.781 kb on + strand, within ABZR87_RS12115at 2570.781 kb on + strand, within ABZR87_RS12115at 2570.781 kb on + strand, within ABZR87_RS12115at 2570.782 kb on - strand, within ABZR87_RS12115at 2570.782 kb on - strand, within ABZR87_RS12115at 2571.177 kb on + strand, within ABZR87_RS12115at 2571.213 kb on + strand, within ABZR87_RS12115at 2571.938 kb on + strand, within ABZR87_RS12120at 2572.137 kb on - strand, within ABZR87_RS12120at 2572.606 kb on + strandat 2572.606 kb on + strandat 2572.606 kb on + strandat 2572.607 kb on - strand, within ABZR87_RS12130at 2572.607 kb on - strand, within ABZR87_RS12130at 2572.985 kb on - strand, within ABZR87_RS12130

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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2,570,647 - ABZR87_RS12115 0.35 +1.4
2,570,781 + ABZR87_RS12115 0.46 -0.6
2,570,781 + ABZR87_RS12115 0.46 -0.3
2,570,781 + ABZR87_RS12115 0.46 -1.9
2,570,782 - ABZR87_RS12115 0.46 -0.2
2,570,782 - ABZR87_RS12115 0.46 +1.8
2,571,177 + ABZR87_RS12115 0.80 +0.1
2,571,213 + ABZR87_RS12115 0.83 -0.6
2,571,938 + ABZR87_RS12120 0.55 -2.4
2,572,137 - ABZR87_RS12120 0.79 -0.6
2,572,606 + -0.9
2,572,606 + +0.4
2,572,606 + +0.7
2,572,607 - ABZR87_RS12130 0.10 +1.9
2,572,607 - ABZR87_RS12130 0.10 -0.7
2,572,985 - ABZR87_RS12130 0.51 +0.6

Or see this region's nucleotide sequence