Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10410

Experiment: soil sample 9; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS10405 and ABZR87_RS10410 overlap by 8 nucleotidesABZR87_RS10410 and ABZR87_RS10415 are separated by 20 nucleotidesABZR87_RS10415 and ABZR87_RS10420 are separated by 98 nucleotides ABZR87_RS10405: ABZR87_RS10405 - lipoprotein-releasing ABC transporter permease subunit, at 2,204,515 to 2,205,765 _RS10405 ABZR87_RS10410: ABZR87_RS10410 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,205,758 to 2,206,486 _RS10410 ABZR87_RS10415: ABZR87_RS10415 - DUF2845 domain-containing protein, at 2,206,507 to 2,206,812 _RS10415 ABZR87_RS10420: ABZR87_RS10420 - TatD family hydrolase, at 2,206,911 to 2,207,723 _RS10420 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -1 0 1at 2205.757 kb on + strandat 2205.757 kb on + strandat 2206.595 kb on + strand, within ABZR87_RS10415at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.720 kb on - strand, within ABZR87_RS10415at 2206.720 kb on - strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.838 kb on + strandat 2206.839 kb on - strandat 2206.857 kb on + strandat 2206.857 kb on + strandat 2206.857 kb on + strandat 2206.857 kb on + strandat 2207.082 kb on + strand, within ABZR87_RS10420at 2207.226 kb on + strand, within ABZR87_RS10420at 2207.227 kb on - strand, within ABZR87_RS10420at 2207.448 kb on - strand, within ABZR87_RS10420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
remove
2,205,757 + +0.2
2,205,757 + -0.7
2,206,595 + ABZR87_RS10415 0.29 -0.7
2,206,595 + ABZR87_RS10415 0.29 -0.5
2,206,595 + ABZR87_RS10415 0.29 -0.7
2,206,596 - ABZR87_RS10415 0.29 +0.4
2,206,596 - ABZR87_RS10415 0.29 +0.7
2,206,596 - ABZR87_RS10415 0.29 -1.6
2,206,596 - ABZR87_RS10415 0.29 -0.6
2,206,596 - ABZR87_RS10415 0.29 +0.3
2,206,596 - ABZR87_RS10415 0.29 +0.2
2,206,596 - ABZR87_RS10415 0.29 +0.2
2,206,596 - ABZR87_RS10415 0.29 +0.8
2,206,596 - ABZR87_RS10415 0.29 +0.1
2,206,596 - ABZR87_RS10415 0.29 -0.4
2,206,596 - ABZR87_RS10415 0.29 +0.7
2,206,596 - ABZR87_RS10415 0.29 -1.6
2,206,720 - ABZR87_RS10415 0.70 +0.1
2,206,720 - ABZR87_RS10415 0.70 +1.3
2,206,721 + ABZR87_RS10415 0.70 -0.2
2,206,721 + ABZR87_RS10415 0.70 -0.3
2,206,721 + ABZR87_RS10415 0.70 +0.4
2,206,838 + +0.1
2,206,839 - +0.8
2,206,857 + +0.3
2,206,857 + -0.8
2,206,857 + +0.1
2,206,857 + +0.5
2,207,082 + ABZR87_RS10420 0.21 -0.9
2,207,226 + ABZR87_RS10420 0.39 -0.4
2,207,227 - ABZR87_RS10420 0.39 -0.3
2,207,448 - ABZR87_RS10420 0.66 +0.4

Or see this region's nucleotide sequence