Experiment: soil sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08645 and ABZR87_RS08650 overlap by 11 nucleotides ABZR87_RS08650 and ABZR87_RS08655 are separated by 12 nucleotides ABZR87_RS08655 and ABZR87_RS08660 are separated by 3 nucleotides
ABZR87_RS08645: ABZR87_RS08645 - dTDP-glucose 4,6-dehydratase, at 1,837,613 to 1,838,677
_RS08645
ABZR87_RS08650: ABZR87_RS08650 - dTDP-4-dehydrorhamnose reductase, at 1,838,667 to 1,839,584
_RS08650
ABZR87_RS08655: ABZR87_RS08655 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,839,597 to 1,840,469
_RS08655
ABZR87_RS08660: ABZR87_RS08660 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,840,473 to 1,841,021
_RS08660
Position (kb)
1838
1839
1840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1838.143 kb on + strand, within ABZR87_RS08645 at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.666 kb on + strand at 1838.667 kb on - strand at 1838.667 kb on - strand at 1838.667 kb on - strand at 1838.667 kb on - strand at 1838.673 kb on + strand at 1838.673 kb on + strand at 1838.673 kb on + strand at 1838.673 kb on + strand at 1838.673 kb on + strand at 1838.674 kb on - strand at 1838.674 kb on - strand at 1838.675 kb on + strand at 1838.675 kb on + strand at 1838.675 kb on + strand at 1838.675 kb on + strand at 1838.783 kb on + strand, within ABZR87_RS08650 at 1838.783 kb on + strand, within ABZR87_RS08650 at 1838.783 kb on + strand, within ABZR87_RS08650 at 1838.868 kb on + strand, within ABZR87_RS08650 at 1838.868 kb on + strand, within ABZR87_RS08650 at 1838.869 kb on - strand, within ABZR87_RS08650 at 1838.869 kb on - strand, within ABZR87_RS08650 at 1838.982 kb on + strand, within ABZR87_RS08650 at 1838.982 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.994 kb on + strand, within ABZR87_RS08650 at 1838.995 kb on - strand, within ABZR87_RS08650 at 1838.995 kb on - strand, within ABZR87_RS08650 at 1839.011 kb on + strand, within ABZR87_RS08650 at 1839.025 kb on - strand, within ABZR87_RS08650 at 1839.025 kb on - strand, within ABZR87_RS08650 at 1839.060 kb on + strand, within ABZR87_RS08650 at 1839.060 kb on + strand, within ABZR87_RS08650 at 1839.060 kb on + strand, within ABZR87_RS08650 at 1839.061 kb on - strand, within ABZR87_RS08650 at 1839.068 kb on + strand, within ABZR87_RS08650 at 1839.068 kb on + strand, within ABZR87_RS08650 at 1839.069 kb on - strand, within ABZR87_RS08650 at 1839.092 kb on + strand, within ABZR87_RS08650 at 1839.092 kb on + strand, within ABZR87_RS08650 at 1839.092 kb on + strand, within ABZR87_RS08650 at 1839.121 kb on + strand, within ABZR87_RS08650 at 1839.121 kb on + strand, within ABZR87_RS08650 at 1839.122 kb on - strand, within ABZR87_RS08650 at 1839.128 kb on + strand, within ABZR87_RS08650 at 1839.225 kb on + strand, within ABZR87_RS08650 at 1839.225 kb on + strand, within ABZR87_RS08650 at 1839.225 kb on + strand, within ABZR87_RS08650 at 1839.225 kb on + strand, within ABZR87_RS08650 at 1839.327 kb on + strand, within ABZR87_RS08650 at 1839.327 kb on + strand, within ABZR87_RS08650 at 1839.327 kb on + strand, within ABZR87_RS08650 at 1839.327 kb on + strand, within ABZR87_RS08650 at 1839.366 kb on + strand, within ABZR87_RS08650 at 1839.366 kb on + strand, within ABZR87_RS08650 at 1839.366 kb on + strand, within ABZR87_RS08650 at 1839.366 kb on + strand, within ABZR87_RS08650 at 1839.366 kb on + strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.367 kb on - strand, within ABZR87_RS08650 at 1839.425 kb on + strand, within ABZR87_RS08650 at 1839.430 kb on - strand, within ABZR87_RS08650 at 1839.524 kb on + strand at 1839.524 kb on + strand at 1839.532 kb on + strand at 1839.532 kb on + strand at 1839.533 kb on - strand at 1839.596 kb on + strand at 1839.596 kb on + strand at 1839.597 kb on - strand at 1839.597 kb on - strand at 1839.597 kb on - strand at 1839.612 kb on - strand at 1839.651 kb on - strand at 1839.702 kb on + strand, within ABZR87_RS08655 at 1839.702 kb on + strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.703 kb on - strand, within ABZR87_RS08655 at 1839.706 kb on - strand, within ABZR87_RS08655 at 1839.736 kb on + strand, within ABZR87_RS08655 at 1839.743 kb on + strand, within ABZR87_RS08655 at 1839.744 kb on - strand, within ABZR87_RS08655 at 1839.759 kb on - strand, within ABZR87_RS08655 at 1839.771 kb on - strand, within ABZR87_RS08655 at 1839.816 kb on - strand, within ABZR87_RS08655 at 1839.828 kb on + strand, within ABZR87_RS08655 at 1839.829 kb on - strand, within ABZR87_RS08655 at 1839.829 kb on - strand, within ABZR87_RS08655 at 1839.829 kb on - strand, within ABZR87_RS08655 at 1839.872 kb on + strand, within ABZR87_RS08655 at 1839.926 kb on + strand, within ABZR87_RS08655 at 1840.002 kb on + strand, within ABZR87_RS08655 at 1840.002 kb on + strand, within ABZR87_RS08655 at 1840.068 kb on - strand, within ABZR87_RS08655 at 1840.068 kb on - strand, within ABZR87_RS08655 at 1840.120 kb on - strand, within ABZR87_RS08655 at 1840.380 kb on - strand, within ABZR87_RS08655 at 1840.382 kb on + strand at 1840.431 kb on + strand at 1840.504 kb on + strand at 1840.505 kb on - strand at 1840.505 kb on - strand at 1840.561 kb on - strand, within ABZR87_RS08660 at 1840.581 kb on - strand, within ABZR87_RS08660
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB remove 1,838,143 + ABZR87_RS08645 0.50 +0.2 1,838,666 + -1.4 1,838,666 + -0.6 1,838,666 + -0.2 1,838,666 + +0.1 1,838,666 + -0.7 1,838,666 + +0.6 1,838,666 + -0.8 1,838,666 + -0.6 1,838,667 - +2.0 1,838,667 - -0.8 1,838,667 - -1.8 1,838,667 - -0.1 1,838,673 + -2.0 1,838,673 + +1.0 1,838,673 + -3.1 1,838,673 + -1.2 1,838,673 + -0.1 1,838,674 - +2.0 1,838,674 - +3.0 1,838,675 + -0.1 1,838,675 + -0.8 1,838,675 + -0.6 1,838,675 + -0.1 1,838,783 + ABZR87_RS08650 0.13 -1.0 1,838,783 + ABZR87_RS08650 0.13 -0.2 1,838,783 + ABZR87_RS08650 0.13 -2.7 1,838,868 + ABZR87_RS08650 0.22 -1.2 1,838,868 + ABZR87_RS08650 0.22 -0.3 1,838,869 - ABZR87_RS08650 0.22 -0.1 1,838,869 - ABZR87_RS08650 0.22 +3.0 1,838,982 + ABZR87_RS08650 0.34 -2.4 1,838,982 + ABZR87_RS08650 0.34 -1.1 1,838,994 + ABZR87_RS08650 0.36 -2.1 1,838,994 + ABZR87_RS08650 0.36 -0.2 1,838,994 + ABZR87_RS08650 0.36 -1.7 1,838,994 + ABZR87_RS08650 0.36 -0.7 1,838,994 + ABZR87_RS08650 0.36 -2.1 1,838,994 + ABZR87_RS08650 0.36 +1.0 1,838,994 + ABZR87_RS08650 0.36 -0.2 1,838,994 + ABZR87_RS08650 0.36 -1.6 1,838,995 - ABZR87_RS08650 0.36 +2.0 1,838,995 - ABZR87_RS08650 0.36 +3.0 1,839,011 + ABZR87_RS08650 0.37 -0.5 1,839,025 - ABZR87_RS08650 0.39 -0.7 1,839,025 - ABZR87_RS08650 0.39 -0.3 1,839,060 + ABZR87_RS08650 0.43 +1.2 1,839,060 + ABZR87_RS08650 0.43 -2.0 1,839,060 + ABZR87_RS08650 0.43 -1.5 1,839,061 - ABZR87_RS08650 0.43 +0.2 1,839,068 + ABZR87_RS08650 0.44 -2.4 1,839,068 + ABZR87_RS08650 0.44 +0.1 1,839,069 - ABZR87_RS08650 0.44 +1.0 1,839,092 + ABZR87_RS08650 0.46 -1.6 1,839,092 + ABZR87_RS08650 0.46 -0.5 1,839,092 + ABZR87_RS08650 0.46 -1.0 1,839,121 + ABZR87_RS08650 0.49 -1.5 1,839,121 + ABZR87_RS08650 0.49 -0.9 1,839,122 - ABZR87_RS08650 0.50 +0.7 1,839,128 + ABZR87_RS08650 0.50 -3.4 1,839,225 + ABZR87_RS08650 0.61 -2.1 1,839,225 + ABZR87_RS08650 0.61 -1.4 1,839,225 + ABZR87_RS08650 0.61 -2.4 1,839,225 + ABZR87_RS08650 0.61 -1.7 1,839,327 + ABZR87_RS08650 0.72 +0.4 1,839,327 + ABZR87_RS08650 0.72 -1.3 1,839,327 + ABZR87_RS08650 0.72 -1.2 1,839,327 + ABZR87_RS08650 0.72 -1.9 1,839,366 + ABZR87_RS08650 0.76 +1.2 1,839,366 + ABZR87_RS08650 0.76 -0.8 1,839,366 + ABZR87_RS08650 0.76 -1.8 1,839,366 + ABZR87_RS08650 0.76 -1.6 1,839,366 + ABZR87_RS08650 0.76 -0.1 1,839,367 - ABZR87_RS08650 0.76 +0.5 1,839,367 - ABZR87_RS08650 0.76 -0.4 1,839,367 - ABZR87_RS08650 0.76 +1.5 1,839,367 - ABZR87_RS08650 0.76 +1.5 1,839,367 - ABZR87_RS08650 0.76 -0.1 1,839,367 - ABZR87_RS08650 0.76 -0.5 1,839,367 - ABZR87_RS08650 0.76 -0.1 1,839,367 - ABZR87_RS08650 0.76 +1.0 1,839,367 - ABZR87_RS08650 0.76 -1.5 1,839,425 + ABZR87_RS08650 0.83 +1.0 1,839,430 - ABZR87_RS08650 0.83 -0.4 1,839,524 + -1.4 1,839,524 + -1.6 1,839,532 + +0.4 1,839,532 + -1.0 1,839,533 - -0.4 1,839,596 + -1.7 1,839,596 + -0.2 1,839,597 - +1.5 1,839,597 - +1.0 1,839,597 - +0.5 1,839,612 - +3.0 1,839,651 - +0.5 1,839,702 + ABZR87_RS08655 0.12 +3.0 1,839,702 + ABZR87_RS08655 0.12 +3.0 1,839,703 - ABZR87_RS08655 0.12 +1.0 1,839,703 - ABZR87_RS08655 0.12 +0.7 1,839,703 - ABZR87_RS08655 0.12 +2.0 1,839,703 - ABZR87_RS08655 0.12 -2.3 1,839,703 - ABZR87_RS08655 0.12 +3.0 1,839,703 - ABZR87_RS08655 0.12 +1.0 1,839,703 - ABZR87_RS08655 0.12 +0.5 1,839,706 - ABZR87_RS08655 0.12 +0.0 1,839,736 + ABZR87_RS08655 0.16 +0.2 1,839,743 + ABZR87_RS08655 0.17 +3.0 1,839,744 - ABZR87_RS08655 0.17 +1.5 1,839,759 - ABZR87_RS08655 0.19 +3.0 1,839,771 - ABZR87_RS08655 0.20 -1.1 1,839,816 - ABZR87_RS08655 0.25 +1.5 1,839,828 + ABZR87_RS08655 0.26 +2.0 1,839,829 - ABZR87_RS08655 0.27 +2.0 1,839,829 - ABZR87_RS08655 0.27 +0.5 1,839,829 - ABZR87_RS08655 0.27 +2.0 1,839,872 + ABZR87_RS08655 0.32 -0.4 1,839,926 + ABZR87_RS08655 0.38 +1.5 1,840,002 + ABZR87_RS08655 0.46 +3.0 1,840,002 + ABZR87_RS08655 0.46 +3.0 1,840,068 - ABZR87_RS08655 0.54 -0.3 1,840,068 - ABZR87_RS08655 0.54 +3.0 1,840,120 - ABZR87_RS08655 0.60 +0.0 1,840,380 - ABZR87_RS08655 0.90 +3.0 1,840,382 + +3.0 1,840,431 + +3.0 1,840,504 + -1.8 1,840,505 - -0.5 1,840,505 - -1.0 1,840,561 - ABZR87_RS08660 0.16 +0.0 1,840,581 - ABZR87_RS08660 0.20 +0.9
Or see this region's nucleotide sequence