Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07645

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07640 and ABZR87_RS07645 are separated by 96 nucleotidesABZR87_RS07645 and ABZR87_RS07650 overlap by 4 nucleotides ABZR87_RS07640: ABZR87_RS07640 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,618,147 to 1,619,721 _RS07640 ABZR87_RS07645: ABZR87_RS07645 - Fis family transcriptional regulator, at 1,619,818 to 1,620,051 _RS07645 ABZR87_RS07650: ABZR87_RS07650 - tRNA dihydrouridine synthase DusB, at 1,620,048 to 1,621,115 _RS07650 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -2 -1 0 1at 1619.964 kb on - strand, within ABZR87_RS07645at 1620.000 kb on - strand, within ABZR87_RS07645at 1620.000 kb on - strand, within ABZR87_RS07645at 1620.003 kb on - strand, within ABZR87_RS07645at 1620.003 kb on - strand, within ABZR87_RS07645at 1620.003 kb on - strand, within ABZR87_RS07645at 1620.125 kb on - strandat 1620.125 kb on - strandat 1620.293 kb on - strand, within ABZR87_RS07650at 1620.301 kb on + strand, within ABZR87_RS07650at 1620.302 kb on - strand, within ABZR87_RS07650at 1620.302 kb on - strand, within ABZR87_RS07650at 1620.302 kb on - strand, within ABZR87_RS07650at 1620.310 kb on + strand, within ABZR87_RS07650at 1620.581 kb on - strand, within ABZR87_RS07650at 1620.581 kb on - strand, within ABZR87_RS07650at 1620.581 kb on - strand, within ABZR87_RS07650at 1620.655 kb on - strand, within ABZR87_RS07650at 1620.655 kb on - strand, within ABZR87_RS07650at 1620.862 kb on + strand, within ABZR87_RS07650at 1620.863 kb on - strand, within ABZR87_RS07650at 1620.863 kb on - strand, within ABZR87_RS07650at 1620.863 kb on - strand, within ABZR87_RS07650

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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1,619,964 - ABZR87_RS07645 0.62 +0.8
1,620,000 - ABZR87_RS07645 0.78 +0.3
1,620,000 - ABZR87_RS07645 0.78 -0.1
1,620,003 - ABZR87_RS07645 0.79 +0.9
1,620,003 - ABZR87_RS07645 0.79 -1.4
1,620,003 - ABZR87_RS07645 0.79 +0.0
1,620,125 - -0.1
1,620,125 - -1.0
1,620,293 - ABZR87_RS07650 0.23 -0.1
1,620,301 + ABZR87_RS07650 0.24 -0.7
1,620,302 - ABZR87_RS07650 0.24 -1.0
1,620,302 - ABZR87_RS07650 0.24 -0.5
1,620,302 - ABZR87_RS07650 0.24 -1.1
1,620,310 + ABZR87_RS07650 0.25 -1.5
1,620,581 - ABZR87_RS07650 0.50 -0.5
1,620,581 - ABZR87_RS07650 0.50 +0.0
1,620,581 - ABZR87_RS07650 0.50 -2.7
1,620,655 - ABZR87_RS07650 0.57 -0.2
1,620,655 - ABZR87_RS07650 0.57 +0.6
1,620,862 + ABZR87_RS07650 0.76 +1.5
1,620,863 - ABZR87_RS07650 0.76 -0.5
1,620,863 - ABZR87_RS07650 0.76 -0.2
1,620,863 - ABZR87_RS07650 0.76 +0.4

Or see this region's nucleotide sequence